Research Output

2019
Open Access
1 Citation (Scopus)

Component of splicing factor SF3b plays a key role in translational control of polyribosomes on the endoplasmic reticulum

Ueno, T., Taga, Y., Yoshimoto, R., Mayeda, A., Hattori, S. & Ogawa-Goto, K., 07-05-2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 19, p. 9340-9349 10 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2018

HMGA1a induces alternative splicing of estrogen receptor alpha in MCF-7 human breast cancer cells

Ohe, K., Miyajima, S., Abe, I., Tanaka, T., Hamaguchi, Y., Harada, Y., Horita, Y., Beppu, Y., Ito, F., Yamasaki, T., Terai, H., Mori, M., Murata, Y., Tanabe, M., Ashida, K., Kobayashi, K., Enjoji, M., Yanase, T., Harada, N., Utsumi, T. & 1 others, Mayeda, A., 09-2018, In : Journal of Steroid Biochemistry and Molecular Biology. 182, p. 21-26 6 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

HMGA1a induces alternative splicing of the estrogen receptor-alpha gene by trapping U1 snRNP to an upstream pseudo-5' splice site

Ohe, K., Miyajima, S., Tanaka, T., Hamaguchi, Y., Harada, Y., Horita, Y., Beppu, Y., Ito, F., Yamasaki, T., Terai, H., Mori, M., Murata, Y., Tanabe, M., Abe, I., Ashida, K., Kobayashi, K., Enjoji, M., Nomiyama, T., Yanase, T., Harada, N. & 2 others, Utsumi, T. & Mayeda, A., 08-06-2018, In : Frontiers in Molecular Biosciences. 5, JUN, 52.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Rearrangement of VPS13B, a causative gene of Cohen syndrome, in a case of RUNX1–RUNX1T1 leukemia with t(8;12;21)

Abe, A., Yamamoto, Y., Katsumi, A., Okamoto, A., Tokuda, M., Inaguma, Y., Yamamoto, K., Yanada, M., Kanie, T., Tomita, A., Akatsuka, Y., Okamoto, M., Kameyama, T., Mayeda, A. & Emi, N., 01-08-2018, In : International Journal of Hematology. 108, 2, p. 208-212 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
3 Citations (Scopus)
2017
12 Citations (Scopus)

Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A

Yoshimoto, R., Kaida, D., Furuno, M., Burroughs, A. M., Noma, S., Suzuki, H., Kawamura, Y., Hayashizaki, Y., Mayeda, A. & Yoshida, M., 01-2017, In : RNA. 23, 1, p. 47-57 11 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)
2016

Control of the heat stress-induced alternative splicing of a subset of genes by hnRNP K

Yamamoto, K., Furukawa, M. T., Fukumura, K., Kawamura, A., Yamada, T., Suzuki, H., Hirose, T., Sakamoto, H. & Inoue, K., 01-09-2016, In : Genes to Cells. 21, 9, p. 1006-1014 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Endogenous multiple exon skipping and back-splicing at the DMD mutation hotspot

Suzuki, H., Aoki, Y., Kameyama, T., Saito, T., Masuda, S., Tanihata, J., Nagata, T., Mayeda, A., Takeda, SI. & Tsukahara, T., 13-10-2016, In : International journal of molecular sciences. 17, 10, 1722.

Research output: Contribution to journalArticle

21 Citations (Scopus)

ETV6-LPXN fusion transcript generated by t(11;12)(q12.1;p13) in a patient with relapsing acute myeloid leukemia with NUP98-HOXA9

Abe, A., Yamamoto, Y., Iba, S., Kanie, T., Okamoto, A., Tokuda, M., Inaguma, Y., Yanada, M., Morishima, S., Mizuta, S., Akatsuka, Y., Okamoto, M., Kameyama, T., Mayeda, A. & Emi, N., 01-03-2016, In : Genes Chromosomes and Cancer. 55, 3, p. 242-250 9 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

MALAT1 long non-coding RNA in cancer

Yoshimoto, R., Mayeda, A., Yoshida, M. & Nakagawa, S., 01-01-2016, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1859, 1, p. 192-199 8 p.

Research output: Contribution to journalArticle

118 Citations (Scopus)

Selection pressure on human STR loci and its relevance in repeat expansion disease

Shimada, M. K., Sanbonmatsu, R., Yamaguchi-Kabata, Y., Yamasaki, C., Suzuki, Y., Chakraborty, R., Gojobori, T. & Imanishi, T., 01-10-2016, In : Molecular Genetics and Genomics. 291, 5, p. 1851-1869 19 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

The exon junction complex controls the efficient and faithful splicing of a subset of transcripts involved in mitotic cell-cycle progression

Fukumura, K., Wakabayashi, S., Kataoka, N., Sakamoto, H., Suzuki, Y., Nakai, K., Mayeda, A. & Inoue, K., 02-08-2016, In : International journal of molecular sciences. 17, 8, 1153.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2015

Identification and validation of evolutionarily conserved unusually short pre-mRNA introns in the human genome

Shimada, M. K., Sasaki-Haraguchi, N. & Mayeda, A., 07-05-2015, In : International journal of molecular sciences. 16, 5, p. 10376-10388 13 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Identification of the specific interactors of the human lariat RNA debranching enzyme 1 protein

Masaki, S., Yoshimoto, R., Kaida, D., Hata, A., Satoh, T., Ohno, M. & Kataoka, N., 09-02-2015, In : International journal of molecular sciences. 16, 2, p. 3705-3721 17 p.

Research output: Contribution to journalArticle

NUP214-RAC1 and RAC1-COL12A1 Fusion in Complex Variant Translocations Involving Chromosomes 6, 7 and 9 in an Acute Myeloid Leukemia Case with DEK-NUP214

Abe, A., Yamamoto, Y., Iba, S., Okamoto, A., Tokuda, M., Inaguma, Y., Yanada, M., Morishima, S., Kanie, T., Tsuzuki, M., Akatsuka, Y., Mizuta, S., Okamoto, M., Kameyama, T., Mayeda, A. & Emi, N., 01-12-2015, In : Cytogenetic and Genome Research. 146, 4, p. 279-284 6 p.

Research output: Contribution to journalArticle

2014

Identification of a novel component C2ORF3 in the lariat-intron complex: Lack of C2ORF3 interferes with pre-mRNA splicing via intron turnover pathway

Yoshimoto, R., Okawa, K., Yoshida, M., Ohno, M. & Kataoka, N., 01-01-2014, In : Genes to Cells. 19, 1, p. 78-87 10 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Splicing inhibition induces gene expression through canonical NF-κB pathway and extracellular signal-related kinase activation

Khan, K., Schneider-Poetsch, T., Ishfaq, M., Ito, A., Yoshimoto, R., Mukaida, N. & Yoshida, M., 18-03-2014, In : FEBS Letters. 588, 6, p. 1053-1057 5 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2013

HnRNP L and hnRNP LL antagonistically modulate PTB-mediated splicing suppression of CHRNA1 pre-mRNA

Rahman, M. A., Masuda, A., Ohe, K., Ito, M., Hutchinson, D. O., Mayeda, A., Engel, A. G. & Ohno, K., 25-10-2013, In : Scientific reports. 3, 2931.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Nested introns in an intron: Evidence of multi-step splicing in a large intron of the human dystrophin pre-mRNA

Suzuki, H., Kameyama, T., Ohe, K., Tsukahara, T. & Mayeda, A., 18-03-2013, In : FEBS Letters. 587, 6, p. 555-561 7 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2012

Detection of pre-mRNA splicing in vitro by an RNA-templated fluorogenic reaction

Tamura, Y., Furukawa, K., Yoshimoto, R., Kawai, Y., Yoshida, M., Tsuneda, S., Ito, Y. & Abe, H., 01-12-2012, In : Bioorganic and Medicinal Chemistry Letters. 22, 23, p. 7248-7251 4 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles

Miyagawa, R., Tano, K., Mizuno, R. I. E., Nakamura, Y. O., Ijiri, K., Rakwal, R., Shibato, J., Masuo, Y., Mayeda, A., Hirose, T. & Akimitsu, N., 01-04-2012, In : RNA. 18, 4, p. 738-751 14 p.

Research output: Contribution to journalArticle

124 Citations (Scopus)

In Vitro Splicing Assays

Mayeda, A. & Krainer, A. R., 02-02-2012, Alternative pre-mRNA Splicing: Theory and Protocols. Wiley-VCH, p. 320-329 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Mechanistic insights into human pre-mRNA splicing of human ultra-short introns: Potential unusual mechanism identifies G-rich introns

Sasaki-Haraguchi, N., Shimada, M. K., Taniguchi, I., Ohno, M. & Mayeda, A., 29-06-2012, In : Biochemical and Biophysical Research Communications. 423, 2, p. 289-294 6 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Prediction of Protein-Destabilizing Polymorphisms by Manual Curation with Protein Structure

Gough, C. A., Homma, K., Yamaguchi-Kabata, Y., Shimada, M. K., Chakraborty, R., Fujii, Y., Iwama, H., Minoshima, S., Sakamoto, S., Sato, Y., Suzuki, Y., Tada-Umezaki, M., Nishikawa, K., Imanishi, T. & Gojobori, T., 26-11-2012, In : PloS one. 7, 11, e50445.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Re-splicing of mature mRNA in cancer cells promotes activation of distant weak alternative splice sites

Kameyama, T., Suzuki, H. & Mayeda, A., 01-09-2012, In : Nucleic Acids Research. 40, 16, p. 7896-7906 11 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

SAP155-mediated splicing of FUSE-binding protein-interacting repressor serves as a molecular switch for c-myc gene expression

Matsushita, K., Kajiwara, T., Tamura, M., Satoh, M., Tanaka, N., Tomonaga, T., Matsubara, H., Shimada, H., Yoshimoto, R., Ito, A., Kubo, S., Natsume, T., Levens, D., Yoshida, M. & Nomura, F., 06-2012, In : Molecular Cancer Research. 10, 6, p. 787-799 13 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)
2011

Competition between a noncoding exon and introns: Gomafu contains tandem UACUAAC repeats and associates with splicing factor-1

Tsuiji, H., Yoshimoto, R., Hasegawa, Y., Furuno, M., Yoshida, M. & Nakagawa, S., 01-05-2011, In : Genes to Cells. 16, 5, p. 479-490 12 p.

Research output: Contribution to journalArticle

93 Citations (Scopus)

Fluorescence detection of intron lariat RNA with reduction-triggered fluorescent probes

Furukawa, K., Abe, H., Tamura, Y., Yoshimoto, R., Yoshida, M., Tsuneda, S. & Ito, Y., 09-12-2011, In : Angewandte Chemie - International Edition. 50, 50, p. 12020-12023 4 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)
2010

A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing

Shimada, M. K., Hayakawa, Y., Takeda, J. I., Gojobori, T. & Imanishi, T., 03-05-2010, In : BMC Evolutionary Biology. 10, 1, 122.

Research output: Contribution to journalArticle

9 Citations (Scopus)
25 Citations (Scopus)

The expression of HMGA1a is increased in lymphoblastoid cell lines from schizophrenia patients

Morikawa, T., Manabe, T., Ito, Y., Yamada, S., Yoshimi, A., Nagai, T., Ozaki, N. & Mayeda, A., 01-05-2010, In : Neurochemistry International. 56, 6-7, p. 736-739 4 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2009

[Oncogenic HMGA1a protein causes sporadic Alzheimer's disease-associated aberrant splicing].

Mayeda, A., Manabe, T. & Ohe, K., 01-12-2009, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 54, 16 Suppl, p. 2245-2250 6 p.

Research output: Contribution to journalReview article

Isolation and characterization of post-splicing lariat-intron complexes

Yoshimoto, R., Kataoka, N., Okawa, K. & Ohno, M., 24-07-2009, In : Nucleic Acids Research. 37, 3, p. 891-902 12 p.

Research output: Contribution to journalArticle

45 Citations (Scopus)

Skewed matrilineal genetic composition in a small wild chimpanzee community

Shimada, M., Hayakawa, S., Fujita, S., Sugiyama, Y. & Saitou, N., 01-04-2009, In : Folia Primatologica. 80, 1, p. 19-32 14 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

VarySysDB: A human genetic polymorphism database based on all H-InvDB transcripts

Shimada, M. K., Matsumoto, R., Hayakawa, Y., Sanbonmatsu, R., Gough, C., Yamaguchi-Kabata, Y., Yamasaki, C., Imanishi, T. & Gojobori, T., 09-01-2009, In : Nucleic Acids Research. 37, SUPPL. 1, p. D810-D815

Research output: Contribution to journalArticle

13 Citations (Scopus)
2008

Distribution and effects of nonsense polymorphisms in human genes

Yamaguchi-Kabata, Y., Shimada, M. K., Hayakawa, Y., Minoshima, S., Chakraborty, R., Gojobori, T. & Imanishi, T., 14-10-2008, In : PloS one. 3, 10, e3393.

Research output: Contribution to journalArticle

31 Citations (Scopus)

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Genome Information Integration Project and H-Invitational 2 Consortium, 01-2008, In : Nucleic acids research. 36, SUPPL. 1, p. D793-D799

Research output: Contribution to journalArticle

55 Citations (Scopus)
2007

HMGA1a: Sequence-specific RNA-binding factor causing sporadic Alzheimer's disease-linked exon skipping of presenilin-2 pre-mRNA

Manabe, T., Ohe, K., Katayama, T., Matsuzaki, S., Yanagita, T., Okuda, H., Bando, Y., Imaizumi, K., Reeves, R., Tohyama, M. & Mayeda, A., 01-10-2007, In : Genes to Cells. 12, 10, p. 1179-1191 13 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)
2005

Activation of pre-mRNA splicing by human RNPS1 is regulated by CK2 phosphorylation

Trembley, J. H., Tatsumi, S., Sakashita, E., Loyer, P., Slaughter, C. A., Suzuki, H., Endo, H., Kidd, V. J. & Mayeda, A., 02-2005, In : Molecular and Cellular Biology. 25, 4, p. 1446-1457 12 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Nucleotide sequence comparison of a chromosome rearrangement on human chromosome 12 and the corresponding ape chromosomes

Shimada, M. K., Kim, C. G., Kitano, T., Ferrell, R. E., Kohara, Y. & Saitou, N., 2005, In : Cytogenetic and Genome Research. 108, 1-3, p. 83-90 8 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2004

Allele frequency distribution of the canine dopamine receptor D4 gene exon III and I in 23 breeds

Ito, H., Nara, H., Inoue-Murayama, M., Shimada, M. K., Koshimura, A., Ueda, Y., Kitagawa, H., Takeuchi, Y., Mori, Y., Murayama, Y., Morita, M., Iwasaki, T., Ôta, K., Tanabe, Y. & Ito, S., 01-07-2004, In : Journal of Veterinary Medical Science. 66, 7, p. 815-820 6 p.

Research output: Contribution to journalArticle

58 Citations (Scopus)

Erratum: Human RNPS1 and Its Associated Factors: A Versatile Alternative Pre-mRNA Splicing Regulator In Vivo (Molecular and Cellular Biology (2004) 24, 3 (1174-1187))

Sakashita, E., Tatsumi, S., Werner, D., Endo, H. & Mayeda, A., 01-04-2004, In : Molecular and Cellular Biology. 24, 7, 1 p.

Research output: Contribution to journalComment/debate

2003
32 Citations (Scopus)

Human Immunodeficiency Virus Type 1 hnRNP A/B-Dependent Exonic Splicing Silencer ESSV Antagonizes Binding of U2AF65 to Viral Polypyrimidine Tracts

Domsic, J. K., Wang, Y., Mayeda, A., Krainer, A. R. & Stoltzfus, C. M., 12-2003, In : Molecular and Cellular Biology. 23, 23, p. 8762-8772 11 p.

Research output: Contribution to journalArticle

53 Citations (Scopus)
2002

High prevalence of simian T-lymphotropic virus type L in wild Ethiopian baboons

Takemura, T., Yamashita, M., Shimada, M. K., Ohkura, S., Shotake, T., Ikeda, M., Miura, T. & Hayami, M., 2002, In : Journal of Virology. 76, 4, p. 1642-1648 7 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)
19 Citations (Scopus)
2001

Differential expression of plexin-A subfamily members in the mouse nervous system

Murakami, Y., Suto, F., Shimizu, M., Shinoda, T., Kameyama, T. & Fujisawa, H., 06-03-2001, In : Developmental Dynamics. 220, 3, p. 246-258 13 p.

Research output: Contribution to journalArticle

91 Citations (Scopus)