Research Output

2020

Bordetella dermonecrotic toxin is a neurotropic virulence factor that uses Cav3.1 as the cell surface receptor

Teruya, S., Hiramatsu, Y., Nakamura, K., Fukui-Miyazaki, A., Tsukamoto, K., Shinoda, N., Motooka, D., Nakamura, S., Ishigaki, K., Shinzawa, N., Nishida, T., Sugihara, F., Maeda, Y. & Horiguchi, Y., 01-03-2020, In : mBio. 11, 2, e03146-19.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Characterization of blaCTX-M-27/F1:A2:b20 plasmids harbored by escherichia coli sequence type 131 sublineage C1/H30R isolates spreading among elderly japanese in nonacute-care settings

Matsuo, N., Nonogaki, R., Hayashi, M., Wachino, J. I., Suzuki, M., Arakawa, Y. & Kawamura, K., 05-2020, In : Antimicrobial agents and chemotherapy. 64, 5, e00202-20.

Research output: Contribution to journalArticle

Clinical and genomic epidemiology of carbapenem- nonsusceptible citrobacter spp. At a tertiary health care center over 2 decades

Babiker, A., Evans, D. R., Griffith, M. P., McElheny, C. L., Hassan, M., Clarke, L. G., Mettus, R. T., Harrison, L. H., Doi, Y., Shields, R. K. & Van Tyne, D., 09-2020, In : Journal of clinical microbiology. 58, 9, e00275-20.

Research output: Contribution to journalArticle

Open Access

Clinical characteristics of peripheral venous catheter-associated gram-negative bloodstream infection among patients with malignancy

Sasaki, T., Harada, S., Yamamoto, S., Ohkushi, D., Hayama, B., Takeda, K., Hoashi, K., Shiotani, J., Takehana, K. & Doi, Y., 01-01-2020, In : PloS one. 15, 1, e0228396.

Research output: Contribution to journalArticle

Open Access

Colistin and its role in the Era of antibiotic resistance: an extended review (2000–2019)

El-Sayed Ahmed, M. A. E. G., Zhong, L. L., Shen, C., Yang, Y., Doi, Y. & Tian, G. B., 01-01-2020, In : Emerging Microbes and Infections. 9, 1, p. 868-885 18 p.

Research output: Contribution to journalReview article

Open Access
4 Citations (Scopus)

Early Experience With Meropenem-Vaborbactam for Treatment of Carbapenem-resistant Enterobacteriaceae Infections

Shields, R. K., McCreary, E. K., Marini, R. V., Kline, E. G., Jones, C. E., Hao, B., Chen, L., Kreiswirth, B. N., Doi, Y., Clancy, C. J. & Nguyen, M. H., 27-07-2020, In : Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 71, 3, p. 667-671 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Emergence of a plasmid-encoded resistance-nodulation- division efflux pump conferring resistance to multiple drugs, including tigecycline, in Klebsiella pneumoniae

Lv, L., Wan, M., Wang, C., Gao, X., Yang, Q., Partridge, S. R., Wang, Y., Zong, Z., Doi, Y., Shen, J., Jia, P., Song, Q., Zhang, Q., Yang, J., Huang, X., Wang, M. & Liu, J. H., 01-03-2020, In : mBio. 11, 2, e02930-19.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Enhanced therapeutic index of an antimicrobial peptide in mice by increasing safety and activity against multidrug-resistant bacteria

Di, Y. P., Lin, Q., Chen, C., Montelaro, R. C., Doi, Y. & Deslouches, B., 04-2020, In : Science advances. 6, 18, eaay6817.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Epidemiology of carbapenem-resistant Enterobacteriaceae in hospitals of a large healthcare system in Miami, Florida from 2012 to 2016: Five years of experience with an internal registry

Jimenez, A., Trepka, M. J., Munoz-Price, L. S., Pekovic, V., Ibrahimou, B., Abbo, L. M., Martinez, O., Sposato, K., dePascale, D., Perez-Cardona, A., McElheny, C. L., Bachman, W. C., Fowler, E. L., Doi, Y. & Fennie, K., 2020, (Accepted/In press) In : American Journal of Infection Control.

Research output: Contribution to journalArticle

Extended-spectrum β-lactamase-producing Escherichia coli

Huang, Y., Zeng, L., Doi, Y., Lv, L. & Liu, J. H., 04-2020, In : The Lancet Infectious Diseases. 20, 4, p. 404-405 2 p.

Research output: Contribution to journalLetter

Open Access

Fatal fulminant community-acquired pneumonia caused by hypervirulent Klebsiella pneumoniae K2-ST86: Case report

Yamamoto, H., Iijima, A., Kawamura, K., Matsuzawa, Y., Suzuki, M. & Arakawa, Y., 22-05-2020, In : Medicine. 99, 21, p. e20360

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Genome-wide identification of essential genes in Mycobacterium intracellulare by transposon sequencing — Implication for metabolic remodeling

Tateishi, Y., Minato, Y., Baughn, A. D., Ohnishi, H., Nishiyama, A., Ozeki, Y. & Matsumoto, S., 01-12-2020, In : Scientific reports. 10, 1, 5449.

Research output: Contribution to journalArticle

Open Access

High-Level Carbapenem Resistance in OXA-232-Producing Raoultella ornithinolytica Triggered by Ertapenem Therapy

Iovleva, A., Mettus, R. T., McElheny, C. L., Griffith, M. P., Mustapha, M. M., William Pasculle, A., Shields, R. K., Cooper, V. S. & Doi, Y., 2020, In : Antimicrobial agents and chemotherapy. 64, 1, e01335-19.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Molecular and clinical epidemiology of carbapenem-resistant Enterobacterales in the USA (CRACKLE-2): a prospective cohort study

Multi-Drug Resistant Organism Network Investigators, 06-2020, In : The Lancet Infectious Diseases. 20, 6, p. 731-741 11 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
1 Citation (Scopus)

OXA-23 and OXA-40 producing carbapenem-resistant Acinetobacter baumannii in Central Illinois

Koirala, J., Tyagi, I., Guntupalli, L., Koirala, S., Chapagain, U., Quarshie, C., Akram, S., Sundareshan, V., Koirala, S., Lawhorn, J., Doi, Y. & Olson, M., 05-2020, In : Diagnostic Microbiology and Infectious Disease. 97, 1, 114999.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Predominance of methicillin-resistant Staphylococcus aureus SCCmec type II-CC5 and SCCmec type IV-CC1/CC8 among companion animal clinical isolates in Japan: Findings from phylogenetic comparison with human clinical isolates

Taniguchi, Y., Koide, S., Maeyama, Y., Tamai, K., Hayashi, W., Tanaka, H., Iimura, M., Suzuki, M., Nagano, Y., Arakawa, Y. & Nagano, N., 03-2020, In : Journal of Global Antimicrobial Resistance. 20, p. 253-259 7 p.

Research output: Contribution to journalArticle

Open Access

Single-tube multiplex polymerase chain reaction for the detection of genes encoding enterobacteriaceae carbapenemase

Watahiki, M., Kawahara, R., Suzuki, M., Aoki, M., Uchida, K., Matsumoto, Y., Kumagai, Y., Noda, M., Masuda, K., Fukuda, C., Harada, S., Senba, K., Suzuki, M., Matsui, M., Suzuki, S., Shibayama, K. & Shinomiya, H., 2020, In : Japanese journal of infectious diseases. 73, 2, p. 166-172 7 p.

Research output: Contribution to journalArticle

Open Access

Structural basis of reduced susceptibility to ceftazidime- avibactam and cefiderocol in enterobacter cloacae due to AmpC R2 loop deletion

Kawai, A., McElheny, C. L., Iovleva, A., Kline, E. G., Sluis-Cremer, N., Shields, R. K. & Doi, Y., 07-2020, In : Antimicrobial agents and chemotherapy. 64, 7, e00198-20.

Research output: Contribution to journalArticle

1 Citation (Scopus)

The Bartonella autotransporter BafA activates the host VEGF pathway to drive angiogenesis

Tsukamoto, K., Shinzawa, N., Kawai, A., Suzuki, M., Kidoya, H., Takakura, N., Yamaguchi, H., Kameyama, T., Inagaki, H., Kurahashi, H., Horiguchi, Y. & Doi, Y., 01-12-2020, In : Nature communications. 11, 1, 3571.

Research output: Contribution to journalArticle

Open Access

The Pitt Bacteremia Score Predicts Mortality in Nonbacteremic Infections

Henderson, H., Luterbach, C. L., Cober, E., Richter, S. S., Salata, R. A., Kalayjian, R. C., Watkins, R. R., Doi, Y., Kaye, K. S., Evans, S., Fowler, V. G., Bonomo, R. A., Harris, A., Napravnik, S. & Van Duin, D., 01-05-2020, In : Clinical Infectious Diseases. 70, 9, p. 1826-1833 8 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Translocation domain of botulinum neurotoxin A subtype 2 potently induces entry into neuronal cells

Kohda, T., Tsukamoto, K., Torii, Y., Kozaki, S. & Mukamoto, M., 01-07-2020, In : MICROBIOLOGY and IMMUNOLOGY. 64, 7, p. 502-511 10 p.

Research output: Contribution to journalArticle

Unusual community-associated carbapenem-resistant Acinetobacter baumannii infection, Pennsylvania, USA

Yassin, M. H., Phan, T. & Doi, Y., 2020, In : IDCases. 21, e00851.

Research output: Contribution to journalArticle

Open Access
2019

Adjunctive therapy of intravenous colistin to intravenous tigecycline for adult patients with non-bacteremic post-surgical intra-abdominal infection due to carbapenem-resistant Acinetobacter baumannii

Chusri, S., Singkhamanan, K., Wanitsuwan, W., Suphasynth, Y., Kositpantawong, N., Panthuwong, S. & Doi, Y., 09-2019, In : Journal of Infection and Chemotherapy. 25, 9, p. 681-686 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

A Primer on AmpC β-Lactamases: Necessary Knowledge for an Increasingly Multidrug-resistant World

Tamma, P. D., Doi, Y., Bonomo, R. A., Johnson, J. K. & Simner, P. J., 27-09-2019, In : Clinical Infectious Diseases. 69, 8, p. 1446-1455 10 p.

Research output: Contribution to journalReview article

12 Citations (Scopus)

A prospective study of acinetobacter baumannii complex isolates and colistin susceptibility monitoring by mass spectrometry of microbial membrane glycolipids

Leung, L. M., McElheny, C. L., Gardner, F. M., Chandler, C. E., Bowler, S. L., Mettus, R. T., Spychala, C. N., Fowler, E. L., Opene, B. N. A., Myers, R. A., Goodlett, D. R., Doi, Y. & Ernst, R. K., 03-2019, In : Journal of clinical microbiology. 57, 3, e01100-18.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Clinical and molecular characteristics of klebsiella pneumoniae isolates causing bloodstream infections in Japan: Occurrence of hypervirulent infections in health care

Harada, S., Aoki, K., Yamamoto, S., Ishii, Y., Sekiya, N., Kurai, H., Furukawa, K., Doi, A., Tochitani, K., Kubo, K., Yamaguchi, Y., Narita, M., Kamiyama, S., Suzuki, J., Fukuchi, T., Gu, Y., Okinaka, K., Shiiki, S., Hayakawa, K., Tachikawa, N. & 7 others, Kasahara, K., Nakamura, T., Yokota, K., Komatsu, M., Takamiya, M., Tateda, K. & Doi, Y., 2019, In : Journal of clinical microbiology. 57, 11, e01206-19.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Clostridioides difficile: A potential source of NpmA in the clinical environment

Marsh, J. W., Pacey, M. P., Ezeonwuka, C., Ohm, S. L., Snyder, D., Cooper, V. S., Harrison, L. H., Doi, Y. & Mustapha, M. M., 01-02-2019, In : Journal of Antimicrobial Chemotherapy. 74, 2, p. 521-523 3 p.

Research output: Contribution to journalLetter

2 Citations (Scopus)

Comprehensive analysis of resistance-nodulation-cell division superfamily (RND) efflux pumps from Serratia marcescens, Db10

Toba, S., Minato, Y., Kondo, Y., Hoshikawa, K., Minagawa, S., Komaki, S., Kumagai, T., Matoba, Y., Morita, D., Ogawa, W., Gotoh, N., Tsuchiya, T. & Kuroda, T., 01-12-2019, In : Scientific reports. 9, 1, 4854.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Evaluation of the accelerate pheno system for identification of acinetobacter clinical isolates and minocycline susceptibility testing

Bowler, S. L., Towne, J. W., Humphries, R. M. & Doi, Y., 03-2019, In : Journal of clinical microbiology. 57, 3, e01711-18.

Research output: Contribution to journalArticle

Fluoroquinolone Prophylaxis Selects for Meropenem-nonsusceptible Pseudomonas aeruginosa in Patients with Hematologic Malignancies and Hematopoietic Cell Transplant Recipients

Hakki, M., Humphries, R. M., Hemarajata, P., Tallman, G. B., Shields, R. K., Mettus, R. T., Doi, Y. & Lewis, J. S., 06-2019, In : Clinical Infectious Diseases. 68, 12, p. 2045-2052 8 p., ciy825.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Genomewide assessment of mycobacterium tuberculosis conditionally essential metabolic pathways

Minato, Y., Gohl, D. M., Thiede, J. M., Chacón, J. M., Harcombe, W. R., Maruyama, F. & Baughn, A. D., 2019, In : mSystems. 4, 4, e00070-19.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Left ventricular assist device-associated endocarditis involving multiple clones of Staphylococcus aureus with distinct antimicrobial susceptibility patterns

Harada, S., Aoki, K., Okamoto, K., Kinoshita, O., Nawata, K., Ishii, Y., Tateda, K., Sasaki, M., Saga, T., Doi, Y., Yotsuyanagi, H., Moriya, K. & Ono, M., 07-2019, In : International Journal of Infectious Diseases. 84, p. 44-47 4 p.

Research output: Contribution to journalArticle

Open Access

Molecular Epidemiology of Ceftriaxone-Nonsusceptible Enterobacterales Isolates in an Academic Medical Center in the United States

Tamma, P. D., Sharara, S. L., Pana, Z. D., Amoah, J., Fisher, S. L., Tekle, T., Doi, Y. & Simner, P. J., 01-08-2019, In : Open Forum Infectious Diseases. 6, 8, ofz353.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

New Treatment Options against Carbapenem-Resistant Acinetobacter baumannii Infections

Isler, B., Doi, Y., Bonomo, R. A. & Paterson, D. L., 01-2019, In : Antimicrobial agents and chemotherapy. 63, 1

Research output: Contribution to journalArticle

30 Citations (Scopus)

Plasmid Carrying blaCTX-M-2 and blaGES-1 in Extensively Drug-Resistant Pseudomonas aeruginosa from Cerebrospinal Fluid

Ballaben, A. S., Galetti, R., Andrade, L. N., Ferreira, J. C., de Oliveira Garcia, D., da Silva, P., Doi, Y. & Darini, A. L. C., 2019, In : Antimicrobial agents and chemotherapy. 63, 7, e00186-19.

Research output: Contribution to journalLetter

Population-level transition of capsular polysaccharide types among sequence type 1 group B Streptococcus isolates with reduced penicillin susceptibility during a long-term hospital epidemic

Nagano, N., Koide, S., Hayashi, W., Taniguchi, Y., Tanaka, H., Maeyama, Y., Suzuki, M., Kimura, K., Arakawa, Y. & Nagano, Y., 03-2019, In : International Journal of Antimicrobial Agents. 53, 3, p. 203-210 8 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Rapid Microbial Identification and Antibiotic Resistance Detection by Mass Spectrometric Analysis of Membrane Lipids

Liang, T., Leung, L. M., Opene, B., Fondrie, W. E., Lee, Y. I., Chandler, C. E., Yoon, S. H., Doi, Y., Ernst, R. K. & Goodlett, D. R., 15-01-2019, In : Analytical Chemistry. 91, 2, p. 1286-1294 9 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Reduced ceftazidime and ertapenem susceptibility due to production of OXA-2 in Klebsiella pneumoniae ST258

Iovleva, A., Mettus, R. T., McElheny, C. L., Mustapha, M. M., Van Tyne, D., Shields, R. K., Pasculle, A. W., Cooper, V. S. & Doi, Y., 01-08-2019, In : The Journal of antimicrobial chemotherapy. 74, 8, p. 2203-2208 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Treatment Options for Carbapenem-resistant Gram-negative Bacterial Infections

Doi, Y., 13-11-2019, In : Clinical Infectious Diseases. 69, p. S565-S575

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)

Trends in incidence and mortality of tuberculosis in Japan: A population-based study, 1997-2016

Hagiya, H., Koyama, T., Zamami, Y., Minato, Y., Tatebe, Y., Mikami, N., Teratani, Y., Ohshima, A., Shinomiya, K., Kitamura, Y., Sendo, T., Hinotsu, S., Tomono, K. & Kano, M. R., 2019, In : Epidemiology and Infection. 147, e38.

Research output: Contribution to journalReview article

Open Access
2 Citations (Scopus)
2018

Absence of fosfomycin resistance in gastrointestinal Escherichia coli following fosfomycin therapy

Mettus, R. T., Bowler, S. L., Kantz, S. F., McElheny, C. L., Pasculle, A. W. & Doi, Y., 01-09-2018, In : Journal of Global Antimicrobial Resistance. 14, p. 109-110 2 p.

Research output: Contribution to journalLetter

Analysis of the Binding of Aripiprazole to Human Serum Albumin: The Importance of a Chloro-Group in the Chemical Structure

Sakurama, K., Kawai, A., Tuan Giam Chuang, V., Kanamori, Y., Osa, M., Taguchi, K., Seo, H., Maruyama, T., Imoto, S., Yamasaki, K. & Otagiri, M., 22-10-2018, In : ACS Omega. 3, 10, p. 13790-13797 8 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Crystal structure analysis of human serum albumin complexed with sodium 4-phenylbutyrate

Kawai, A., Yamasaki, K., Enokida, T., Miyamoto, S. & Otagiri, M., 03-2018, In : Biochemistry and Biophysics Reports. 13, p. 78-82 5 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)

Detection of Escherichia coli producing CTX-M-1-group extended-spectrum β -lactamases from pigs in Aichi Prefecture, Japan, between 2015 and 2016

Norizuki, C., Kawamura, K., Wachino, J. I., Suzuki, M., Nagano, N., Kondo, T. & Arakawa, Y., 2018, In : Japanese journal of infectious diseases. 71, 1, p. 33-38 6 p.

Research output: Contribution to journalArticle

Open Access
9 Citations (Scopus)

Detection of high-risk carbapenem-resistant Klebsiella pneumoniae and Enterobacter cloacae isolates using volatile molecular profiles

Rees, C. A., Nasir, M., Smolinska, A., Lewis, A. E., Kane, K. R., Kossmann, S. E., Sezer, O., Zucchi, P. C., Doi, Y., Hirsch, E. B. & Hill, J. E., 01-12-2018, In : Scientific reports. 8, 1, 13297.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Distribution and molecular characterization of Acinetobacter baumannii international clone II lineage in Japan

Matsui, M., Suzuki, M., Suzuki, M., Yatsuyanagi, J., Watahiki, M., Hiraki, Y., Kawano, F., Tsutsui, A., Shibayama, K. & Suzuki, S., 02-2018, In : Antimicrobial agents and chemotherapy. 62, 2, e02190-17.

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

Diversity among bla KPC-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients

Hazen, T. H., Mettus, R., McElheny, C. L., Bowler, S. L., Nagaraj, S., Doi, Y. & Rasko, D. A., 01-12-2018, In : Scientific reports. 8, 1, 10291.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Draft genome sequences of blaKPC-containing Enterobacter aerogenes, Citrobacter freundii, and Citrobacter koseri strains

Hazen, T. H., Mettus, R. T., McElheny, C. L., Bowler, S. L., Doi, Y. & Rasko, D. A., 01-02-2018, In : Genome Announcements. 6, 8, e00035-18.

Research output: Contribution to journalArticle

1 Citation (Scopus)