A palindromic motif in the -2084 to -2078 upstream region is essential for ABCA12 promoter function in cultured human keratinocytes

Yoshitaka Shimizu, Yasushi Ogawa, Kazumitsu Sugiura, Jun Ichi Takeda, Kaori Sakai-Sawada, Teruki Yanagi, Atsushi Kon, Daisuke Sawamura, Hiroshi Shimizu, Masashi Akiyama

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3 Citations (Scopus)

Abstract

ATP-binding cassette transporter family A member 12 (ABCA12) is a keratinocyte transmembrane lipid transporter that plays a critical role in preserving the skin permeability barrier. Biallelic loss of function of the ABCA12 gene is causative of some forms of recessive congenital ichthyosis, an intractable disease marked by dry, thickened and scaly skin on the whole body. Genetic diagnosis is essential, although the results may occasionally be inconclusive, because some patients with low ABCA12 expression have one mutant allele and one apparently intact allele. Aside from aberrant splicing or deletion mutations, one possible explanation for such discrepancy is loss of promoter function. This study aims to elucidate the promoter region of ABCA12 and to locate the essential elements therein, thus providing the necessary information for genetic diagnostic screening of congenital ichthyosis. Close examination of the 2980-bp upstream regions of the ABCA12 gene revealed that a palindromic motif (tgagtca) at -2084 to -2078 is essential for the promoter function, and a short fragment of -2200/-1934 alone has potent promoter activity. Identification of the key promoter element of ABCA12 in this study may provide relevant information for genetic diagnosis of recessive congenital ichthyosis.

Original languageEnglish
Article number6737
JournalScientific reports
Volume4
DOIs
Publication statusPublished - 23-10-2014

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ATP-Binding Cassette Transporters
Keratinocytes
Ichthyosis
Alleles
Skin
Sequence Deletion
Genetic Testing
Genetic Promoter Regions
Genes
Permeability
Lipids

All Science Journal Classification (ASJC) codes

  • General

Cite this

Shimizu, Yoshitaka ; Ogawa, Yasushi ; Sugiura, Kazumitsu ; Takeda, Jun Ichi ; Sakai-Sawada, Kaori ; Yanagi, Teruki ; Kon, Atsushi ; Sawamura, Daisuke ; Shimizu, Hiroshi ; Akiyama, Masashi. / A palindromic motif in the -2084 to -2078 upstream region is essential for ABCA12 promoter function in cultured human keratinocytes. In: Scientific reports. 2014 ; Vol. 4.
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abstract = "ATP-binding cassette transporter family A member 12 (ABCA12) is a keratinocyte transmembrane lipid transporter that plays a critical role in preserving the skin permeability barrier. Biallelic loss of function of the ABCA12 gene is causative of some forms of recessive congenital ichthyosis, an intractable disease marked by dry, thickened and scaly skin on the whole body. Genetic diagnosis is essential, although the results may occasionally be inconclusive, because some patients with low ABCA12 expression have one mutant allele and one apparently intact allele. Aside from aberrant splicing or deletion mutations, one possible explanation for such discrepancy is loss of promoter function. This study aims to elucidate the promoter region of ABCA12 and to locate the essential elements therein, thus providing the necessary information for genetic diagnostic screening of congenital ichthyosis. Close examination of the 2980-bp upstream regions of the ABCA12 gene revealed that a palindromic motif (tgagtca) at -2084 to -2078 is essential for the promoter function, and a short fragment of -2200/-1934 alone has potent promoter activity. Identification of the key promoter element of ABCA12 in this study may provide relevant information for genetic diagnosis of recessive congenital ichthyosis.",
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Shimizu, Y, Ogawa, Y, Sugiura, K, Takeda, JI, Sakai-Sawada, K, Yanagi, T, Kon, A, Sawamura, D, Shimizu, H & Akiyama, M 2014, 'A palindromic motif in the -2084 to -2078 upstream region is essential for ABCA12 promoter function in cultured human keratinocytes', Scientific reports, vol. 4, 6737. https://doi.org/10.1038/srep06737

A palindromic motif in the -2084 to -2078 upstream region is essential for ABCA12 promoter function in cultured human keratinocytes. / Shimizu, Yoshitaka; Ogawa, Yasushi; Sugiura, Kazumitsu; Takeda, Jun Ichi; Sakai-Sawada, Kaori; Yanagi, Teruki; Kon, Atsushi; Sawamura, Daisuke; Shimizu, Hiroshi; Akiyama, Masashi.

In: Scientific reports, Vol. 4, 6737, 23.10.2014.

Research output: Contribution to journalArticle

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AU - Takeda, Jun Ichi

AU - Sakai-Sawada, Kaori

AU - Yanagi, Teruki

AU - Kon, Atsushi

AU - Sawamura, Daisuke

AU - Shimizu, Hiroshi

AU - Akiyama, Masashi

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N2 - ATP-binding cassette transporter family A member 12 (ABCA12) is a keratinocyte transmembrane lipid transporter that plays a critical role in preserving the skin permeability barrier. Biallelic loss of function of the ABCA12 gene is causative of some forms of recessive congenital ichthyosis, an intractable disease marked by dry, thickened and scaly skin on the whole body. Genetic diagnosis is essential, although the results may occasionally be inconclusive, because some patients with low ABCA12 expression have one mutant allele and one apparently intact allele. Aside from aberrant splicing or deletion mutations, one possible explanation for such discrepancy is loss of promoter function. This study aims to elucidate the promoter region of ABCA12 and to locate the essential elements therein, thus providing the necessary information for genetic diagnostic screening of congenital ichthyosis. Close examination of the 2980-bp upstream regions of the ABCA12 gene revealed that a palindromic motif (tgagtca) at -2084 to -2078 is essential for the promoter function, and a short fragment of -2200/-1934 alone has potent promoter activity. Identification of the key promoter element of ABCA12 in this study may provide relevant information for genetic diagnosis of recessive congenital ichthyosis.

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