Association study of polymorphisms in the glutamate transporter genes SLC1A1, SLC1A3, and SLC1A6 with schizophrenia

Xiangdong Deng, Hiroki Shibata, Naoko Takeuchi, Shinako Rachi, Mayumi Sakai, Hideaki Ninomiya, Nakao Iwata, Norio Ozaki, Yasuyuki Fukumaki

Research output: Contribution to journalArticle

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Abstract

Based on the glutamatergic dysfunction hypothesis for schizophrenia pathogenesis, we have been performing systematic association studies of schizophrenia with the glutamate receptor and transporter genes. We report here association studies of schizophrenia with three glutamate transporter genes SLC1A1, SLC1A3, and SLC1A6 encoding the glutamate transporters EAAT3, EAAT1, and EAAT4, respectively. We initially performed the screening of the total 25 single nucleotide polymorphisms (SNPs) distributed in the three gene regions using 100 out of 400 Japanese cases and 100 out of 420 Japanese controls. After controlling the false discovery rate (FDR) at level 0.05, we observed significant associations of schizophrenia with a genotype of SNP4 (rs2097837, P = 0.007) and with haplotypes of SNP2-SNP5 (P = 7.5 × 10-5) and SNP3-SNP5 (P = 9.0 × 10-4) in the SLC1A6 region. The haplotype of SNP2-SNP5 of SLC1A6 even showed marginally significant association with the disease in the full-size sample (400 cases and 420 controls, P = 0.031). We concluded that at least one susceptibility locus for schizophrenia may be located within or nearby SLC1A6, whereas SLC1A1 and SLC1A3 are unlikely to be major susceptibility genes for schizophrenia in the Japanese population.

Original languageEnglish
Pages (from-to)271-278
Number of pages8
JournalAmerican Journal of Medical Genetics, Part B: Neuropsychiatric Genetics
Volume144
Issue number3
DOIs
Publication statusPublished - 05-04-2007

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Amino Acid Transport System X-AG
Schizophrenia
Genes
Haplotypes
Glutamate Receptors
Sample Size
Single Nucleotide Polymorphism
Genotype
Population

All Science Journal Classification (ASJC) codes

  • Genetics(clinical)
  • Neuropsychology and Physiological Psychology
  • Neuroscience(all)

Cite this

Deng, Xiangdong ; Shibata, Hiroki ; Takeuchi, Naoko ; Rachi, Shinako ; Sakai, Mayumi ; Ninomiya, Hideaki ; Iwata, Nakao ; Ozaki, Norio ; Fukumaki, Yasuyuki. / Association study of polymorphisms in the glutamate transporter genes SLC1A1, SLC1A3, and SLC1A6 with schizophrenia. In: American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 2007 ; Vol. 144, No. 3. pp. 271-278.
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Association study of polymorphisms in the glutamate transporter genes SLC1A1, SLC1A3, and SLC1A6 with schizophrenia. / Deng, Xiangdong; Shibata, Hiroki; Takeuchi, Naoko; Rachi, Shinako; Sakai, Mayumi; Ninomiya, Hideaki; Iwata, Nakao; Ozaki, Norio; Fukumaki, Yasuyuki.

In: American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, Vol. 144, No. 3, 05.04.2007, p. 271-278.

Research output: Contribution to journalArticle

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AU - Deng, Xiangdong

AU - Shibata, Hiroki

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AU - Rachi, Shinako

AU - Sakai, Mayumi

AU - Ninomiya, Hideaki

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