Characterization of the STK11 splicing variant as a normal splicing isomer in a patient with Peutz-Jeghers syndrome harboring genomic deletion of the STK11 gene

Kenta Masuda; Yusuke Kobayashi; Tokuhiro Kimura; Kiyoko Umene; Kumiko Misu; Hiroyuki Nomura; Akira Hirasawa; Kouji Banno; Kenjiro Kosaki; Daisuke Aoki; Kokichi Sugano

doi:10.1038/hgv.2016.2

Characterization of the STK11 splicing variant as a normal splicing isomer in a patient with Peutz-Jeghers syndrome harboring genomic deletion of the STK11 gene

Kenta Masuda, Yusuke Kobayashi, Tokuhiro Kimura, Kiyoko Umene, Kumiko Misu, Hiroyuki Nomura, Akira Hirasawa, Kouji Banno, Kenjiro Kosaki, Daisuke Aoki, Kokichi Sugano

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

Abstract

We report a STK11 splicing variant comprising a 131-bp insertion that is derived from intron 1, which has previously been reported to possess potent pathogenicity the same variant was detected in a Peutz-Jeghers syndrome patient harboring a genomic deletion in the vicinity of exon 1 of the STK11 gene, which indicated that this variant was derived from the wild-type allele. We also found the same variant in other normal subjects. This variant corresponds to the predicted transcript variant of STK11 (XM-011528209), which is derived from the genomic sequence of Chr19 (NT-011295.12). Therefore, we concluded that the splicing variant was not pathogenic.

Original language	English
Article number	16002
Journal	Human Genome Variation
Volume	3
DOIs	https://doi.org/10.1038/hgv.2016.2
Publication status	Published - 03-03-2016
Externally published	Yes

All Science Journal Classification (ASJC) codes

Biochemistry
Molecular Biology
Genetics

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10.1038/hgv.2016.2

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Masuda, K., Kobayashi, Y., Kimura, T., Umene, K., Misu, K., Nomura, H., Hirasawa, A., Banno, K., Kosaki, K., Aoki, D., & Sugano, K. (2016). Characterization of the STK11 splicing variant as a normal splicing isomer in a patient with Peutz-Jeghers syndrome harboring genomic deletion of the STK11 gene. Human Genome Variation, 3, Article 16002. https://doi.org/10.1038/hgv.2016.2

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abstract = "We report a STK11 splicing variant comprising a 131-bp insertion that is derived from intron 1, which has previously been reported to possess potent pathogenicity the same variant was detected in a Peutz-Jeghers syndrome patient harboring a genomic deletion in the vicinity of exon 1 of the STK11 gene, which indicated that this variant was derived from the wild-type allele. We also found the same variant in other normal subjects. This variant corresponds to the predicted transcript variant of STK11 (XM-011528209), which is derived from the genomic sequence of Chr19 (NT-011295.12). Therefore, we concluded that the splicing variant was not pathogenic.",

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doi = "10.1038/hgv.2016.2",

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AU - Masuda, Kenta

AU - Kobayashi, Yusuke

AU - Kimura, Tokuhiro

AU - Umene, Kiyoko

AU - Misu, Kumiko

AU - Nomura, Hiroyuki

AU - Hirasawa, Akira

AU - Banno, Kouji

AU - Kosaki, Kenjiro

AU - Aoki, Daisuke

AU - Sugano, Kokichi

PY - 2016/3/3

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N2 - We report a STK11 splicing variant comprising a 131-bp insertion that is derived from intron 1, which has previously been reported to possess potent pathogenicity the same variant was detected in a Peutz-Jeghers syndrome patient harboring a genomic deletion in the vicinity of exon 1 of the STK11 gene, which indicated that this variant was derived from the wild-type allele. We also found the same variant in other normal subjects. This variant corresponds to the predicted transcript variant of STK11 (XM-011528209), which is derived from the genomic sequence of Chr19 (NT-011295.12). Therefore, we concluded that the splicing variant was not pathogenic.

AB - We report a STK11 splicing variant comprising a 131-bp insertion that is derived from intron 1, which has previously been reported to possess potent pathogenicity the same variant was detected in a Peutz-Jeghers syndrome patient harboring a genomic deletion in the vicinity of exon 1 of the STK11 gene, which indicated that this variant was derived from the wild-type allele. We also found the same variant in other normal subjects. This variant corresponds to the predicted transcript variant of STK11 (XM-011528209), which is derived from the genomic sequence of Chr19 (NT-011295.12). Therefore, we concluded that the splicing variant was not pathogenic.

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Characterization of the STK11 splicing variant as a normal splicing isomer in a patient with Peutz-Jeghers syndrome harboring genomic deletion of the STK11 gene

Abstract

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