Excess of homozygosity in the major histocompatibility complex in schizophrenia

Semanti Mukherjee, Saurav Guha, Masashi Ikeda, Nakao Iwata, Anil K. Malhotra, Itsik Pe'er, Ariel Darvasi, Todd Lencz

Research output: Contribution to journalArticle

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Abstract

Genome-wide association studies (GWAS) in schizophrenia have focused on additive allelic effects to identify disease risk loci. In order to examine potential recessive effects, we applied a novel approach to identify regions of excesshomozygosity in an ethnicallyhomogenous cohort: 904 schizophrenia cases and 1640 controls drawn from the Ashkenazi Jewish (AJ) population. Genome-wide examination of runs of homozygosity identified an excess in cases localized to the major histocompatibility complex (MHC). To refine this signal, we used the recently developed GERMLINE algorithm to identify chromosomal segments shared identical-by-descent (IBD) and compared homozygosity at such segments in cases and controls. We found a significant excess of homozygosity in schizophrenia cases compared with controls in the MHC (P-value 5 0.003). An independent replication cohort of 548 schizophrenia cases from Japan and 542 matched healthy controls demonstrated similar effects. The strongest case-control recessive effects (P 5 8.81 3 1028) were localized to a 53-kb region near HLA-A, in a segment encompassing three poorly annotated genes, TRIM10, TRIM15 and TRIM40. At the same time, an adjacent segment in the Class IMHCdemonstrated clear additive effects on schizophrenia risk, demonstrating the complexity of association in the MHC and the ability of our IBD approach to refine localization of broad signals derived from conventional GWAS. In sum, homozygosity in the classical MHC region appears to convey significant risk for schizophrenia, consistent with the ecological literature suggesting that homozygosity at the MHC locus may be associated with vulnerability to disease.

Original languageEnglish
Pages (from-to)6088-6095
Number of pages8
JournalHuman molecular genetics
Volume23
Issue number22
DOIs
Publication statusPublished - 15-11-2014

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Major Histocompatibility Complex
Schizophrenia
Genome-Wide Association Study
Aptitude
HLA-A Antigens
Japan
Genome
Population
Genes

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Genetics
  • Genetics(clinical)

Cite this

Mukherjee, Semanti ; Guha, Saurav ; Ikeda, Masashi ; Iwata, Nakao ; Malhotra, Anil K. ; Pe'er, Itsik ; Darvasi, Ariel ; Lencz, Todd. / Excess of homozygosity in the major histocompatibility complex in schizophrenia. In: Human molecular genetics. 2014 ; Vol. 23, No. 22. pp. 6088-6095.
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Mukherjee, S, Guha, S, Ikeda, M, Iwata, N, Malhotra, AK, Pe'er, I, Darvasi, A & Lencz, T 2014, 'Excess of homozygosity in the major histocompatibility complex in schizophrenia', Human molecular genetics, vol. 23, no. 22, pp. 6088-6095. https://doi.org/10.1093/hmg/ddu308

Excess of homozygosity in the major histocompatibility complex in schizophrenia. / Mukherjee, Semanti; Guha, Saurav; Ikeda, Masashi; Iwata, Nakao; Malhotra, Anil K.; Pe'er, Itsik; Darvasi, Ariel; Lencz, Todd.

In: Human molecular genetics, Vol. 23, No. 22, 15.11.2014, p. 6088-6095.

Research output: Contribution to journalArticle

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AU - Mukherjee, Semanti

AU - Guha, Saurav

AU - Ikeda, Masashi

AU - Iwata, Nakao

AU - Malhotra, Anil K.

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AU - Lencz, Todd

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