Functional genetic variation at the NRGN gene and schizophrenia

Evidence from a gene-based case-control study and gene expression analysis

Kazutaka Ohi, Ryota Hashimoto, Yuka Yasuda, Motoyuki Fukumoto, Hidenaga Yamamori, Satomi Umeda-Yano, Takeya Okada, Kouzin Kamino, Takashi Morihara, Masao Iwase, Hiroaki Kazui, Shusuke Numata, Masashi Ikeda, Tohru Ohnuma, Nakao Iwata, Shu ichi Ueno, Norio Ozaki, Tetsuro Ohmori, Heii Arai, Masatoshi Takeda

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

Genome-wide association and follow-up studies have reported an association between schizophrenia and rs12807809 of the NRGN gene on chromosome 11q24.2. We investigated the association of five linkage disequilibrium-tagging SNPs and haplotypes that cover the NRGN gene with schizophrenia in a Japanese sample of 2,019 schizophrenia patients and 2,574 controls to determine whether rs12807809 is the most strongly associated variant for schizophrenia in the vicinity of the NRGN gene. We found that the rs12807809-rs12278912 haplotype of the NRGN gene was associated with schizophrenia (global P=0.0042). The frequencies of the TG and TA haplotypes of rs12807809-rs12278912 in patients were higher (OR=1.14, P=0.0019) and lower (OR=0.85, P=0.0053), respectively, than in the controls. We did not detect any evidence of association of schizophrenia with any SNPs; however, two nominal associations of rs12278912 (OR=1.10, P=0.057) and rs2075713 (OR=1.10, P=0.057) were observed. Furthermore, we detected an association between the rs12807809-rs12278912 haplotype and NRGN expression in immortalized lymphoblasts derived from 45 HapMap JPT subjects (z=2.69, P=0.007) and confirmed the association in immortalized lymphoblasts derived from 42 patients with schizophrenia and 44 healthy controls (z=3.09, P=0.002). The expression of the high-risk TG haplotype was significantly lower than the protective TA haplotype. The expression was lower in patients with schizophrenia than in controls; however, this difference was not statistically significant. This study provides further evidence of the association of the NRGN gene with schizophrenia, and our results suggest that there is a link between the TG haplotype of rs12807809-rs12278912, decreased expression of NRGN and risk of developing schizophrenia.

Original languageEnglish
Pages (from-to)405-413
Number of pages9
JournalAmerican Journal of Medical Genetics, Part B: Neuropsychiatric Genetics
Volume159 B
Issue number4
DOIs
Publication statusPublished - 01-06-2012

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Case-Control Studies
Schizophrenia
Gene Expression
Haplotypes
Genes
Single Nucleotide Polymorphism
HapMap Project
Linkage Disequilibrium
Chromosomes
Genome

All Science Journal Classification (ASJC) codes

  • Genetics(clinical)
  • Psychiatry and Mental health
  • Cellular and Molecular Neuroscience

Cite this

Ohi, Kazutaka ; Hashimoto, Ryota ; Yasuda, Yuka ; Fukumoto, Motoyuki ; Yamamori, Hidenaga ; Umeda-Yano, Satomi ; Okada, Takeya ; Kamino, Kouzin ; Morihara, Takashi ; Iwase, Masao ; Kazui, Hiroaki ; Numata, Shusuke ; Ikeda, Masashi ; Ohnuma, Tohru ; Iwata, Nakao ; Ueno, Shu ichi ; Ozaki, Norio ; Ohmori, Tetsuro ; Arai, Heii ; Takeda, Masatoshi. / Functional genetic variation at the NRGN gene and schizophrenia : Evidence from a gene-based case-control study and gene expression analysis. In: American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics. 2012 ; Vol. 159 B, No. 4. pp. 405-413.
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abstract = "Genome-wide association and follow-up studies have reported an association between schizophrenia and rs12807809 of the NRGN gene on chromosome 11q24.2. We investigated the association of five linkage disequilibrium-tagging SNPs and haplotypes that cover the NRGN gene with schizophrenia in a Japanese sample of 2,019 schizophrenia patients and 2,574 controls to determine whether rs12807809 is the most strongly associated variant for schizophrenia in the vicinity of the NRGN gene. We found that the rs12807809-rs12278912 haplotype of the NRGN gene was associated with schizophrenia (global P=0.0042). The frequencies of the TG and TA haplotypes of rs12807809-rs12278912 in patients were higher (OR=1.14, P=0.0019) and lower (OR=0.85, P=0.0053), respectively, than in the controls. We did not detect any evidence of association of schizophrenia with any SNPs; however, two nominal associations of rs12278912 (OR=1.10, P=0.057) and rs2075713 (OR=1.10, P=0.057) were observed. Furthermore, we detected an association between the rs12807809-rs12278912 haplotype and NRGN expression in immortalized lymphoblasts derived from 45 HapMap JPT subjects (z=2.69, P=0.007) and confirmed the association in immortalized lymphoblasts derived from 42 patients with schizophrenia and 44 healthy controls (z=3.09, P=0.002). The expression of the high-risk TG haplotype was significantly lower than the protective TA haplotype. The expression was lower in patients with schizophrenia than in controls; however, this difference was not statistically significant. This study provides further evidence of the association of the NRGN gene with schizophrenia, and our results suggest that there is a link between the TG haplotype of rs12807809-rs12278912, decreased expression of NRGN and risk of developing schizophrenia.",
author = "Kazutaka Ohi and Ryota Hashimoto and Yuka Yasuda and Motoyuki Fukumoto and Hidenaga Yamamori and Satomi Umeda-Yano and Takeya Okada and Kouzin Kamino and Takashi Morihara and Masao Iwase and Hiroaki Kazui and Shusuke Numata and Masashi Ikeda and Tohru Ohnuma and Nakao Iwata and Ueno, {Shu ichi} and Norio Ozaki and Tetsuro Ohmori and Heii Arai and Masatoshi Takeda",
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Ohi, K, Hashimoto, R, Yasuda, Y, Fukumoto, M, Yamamori, H, Umeda-Yano, S, Okada, T, Kamino, K, Morihara, T, Iwase, M, Kazui, H, Numata, S, Ikeda, M, Ohnuma, T, Iwata, N, Ueno, SI, Ozaki, N, Ohmori, T, Arai, H & Takeda, M 2012, 'Functional genetic variation at the NRGN gene and schizophrenia: Evidence from a gene-based case-control study and gene expression analysis', American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, vol. 159 B, no. 4, pp. 405-413. https://doi.org/10.1002/ajmg.b.32043

Functional genetic variation at the NRGN gene and schizophrenia : Evidence from a gene-based case-control study and gene expression analysis. / Ohi, Kazutaka; Hashimoto, Ryota; Yasuda, Yuka; Fukumoto, Motoyuki; Yamamori, Hidenaga; Umeda-Yano, Satomi; Okada, Takeya; Kamino, Kouzin; Morihara, Takashi; Iwase, Masao; Kazui, Hiroaki; Numata, Shusuke; Ikeda, Masashi; Ohnuma, Tohru; Iwata, Nakao; Ueno, Shu ichi; Ozaki, Norio; Ohmori, Tetsuro; Arai, Heii; Takeda, Masatoshi.

In: American Journal of Medical Genetics, Part B: Neuropsychiatric Genetics, Vol. 159 B, No. 4, 01.06.2012, p. 405-413.

Research output: Contribution to journalArticle

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T1 - Functional genetic variation at the NRGN gene and schizophrenia

T2 - Evidence from a gene-based case-control study and gene expression analysis

AU - Ohi, Kazutaka

AU - Hashimoto, Ryota

AU - Yasuda, Yuka

AU - Fukumoto, Motoyuki

AU - Yamamori, Hidenaga

AU - Umeda-Yano, Satomi

AU - Okada, Takeya

AU - Kamino, Kouzin

AU - Morihara, Takashi

AU - Iwase, Masao

AU - Kazui, Hiroaki

AU - Numata, Shusuke

AU - Ikeda, Masashi

AU - Ohnuma, Tohru

AU - Iwata, Nakao

AU - Ueno, Shu ichi

AU - Ozaki, Norio

AU - Ohmori, Tetsuro

AU - Arai, Heii

AU - Takeda, Masatoshi

PY - 2012/6/1

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