Haplotype-based localization of an alcohol dependence gene to the 5q34 γ-aminobutyric acid type A gene cluster

Marta Radel, Roger L. Vallejo, Nakao Iwata, Richard Aragon, Jeffrey C. Long, Matti Virkkunen, David Goldman

Research output: Contribution to journalArticle

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Abstract

Context: Pharmacobehavioral and pharmacogenetic evidence links γ-aminobutyric acid type A (GABAA) receptors and chromosomal regions containing GABAA receptor genes to ethanol-related responses. The GABAA gene cluster on chromosome 5q34 is of particular interest in the genetics of alcohol dependence because of the γ2 subunit requirement for ethanol's modulatory action on GABAA receptors, previous linkage findings in mice and humans implicating both GABRA6 and GABRG2, and reported associations of GABRA6, GABRB2, and GABRG2 alleles with alcohol dependence. Objective: To determine whether variation at the 5q34 GABA A gene cluster is implicated in differential susceptibility to alcohol dependence. Methods: Two large psychiatrically interviewed samples, a Southwestern Native American population sample (N = 433) and a Finnish sample (N = 511) with alcohol-dependent subjects and unaffected individuals, were genotyped for 6 single nucleotide polymorphisms at the 5q34 GABAA gene cluster. In addition to sib-pair linkage and case-control association analyses, linkage disequilibrium mapping with haplotypes was used. Results: Sib-pair linkage of GABRG2 to alcohol dependence was observed in Finns (P = .008). Association of the GABRB2 1412T allele with alcohol dependence was detected in both populations (Finns, P = .01; Southwestern Native Americans, P = .008), and the GABRA6 1519T allele was associated in both Finns (P = .01) and Southwestern Native Americans (P = .03). Linkage disequilibrium mapping with 3-locus haplotypes yielded evidence for an alcohol-dependence locus at the GABAA gene cluster region in both populations. The most highly significant signals were at 3-locus haplotypes that included 1 or more GABRA6 polymorphisms, with the peak signal at a GABRA6 3-locus haplotype (Finns, empirical P = .004; Southwestern Native Americans, empirical P = .02). Conclusions: We detected sib-pair linkage of 5q34 GABAA receptor genes to alcohol dependence in Finns and found association both in Finns and in Southwestern Native Americans. In both populations, the haplotype localization implicates the region containing the Pro385Ser GABRA6 polymorphism and 2 other polymorphisms at GABRA6.

Original languageEnglish
Pages (from-to)47-55
Number of pages9
JournalArchives of General Psychiatry
Volume62
Issue number1
DOIs
Publication statusPublished - 01-01-2005

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Aminobutyrates
Multigene Family
Haplotypes
Alcoholism
North American Indians
GABA-A Receptors
Genes
Chromosome Mapping
Alleles
Linkage Disequilibrium
Population
Ethanol
Pharmacogenetics
Gene
Localization
Alcohol
gamma-Aminobutyric Acid
Single Nucleotide Polymorphism
Chromosomes
Linkage

All Science Journal Classification (ASJC) codes

  • Arts and Humanities (miscellaneous)
  • Psychiatry and Mental health

Cite this

Radel, Marta ; Vallejo, Roger L. ; Iwata, Nakao ; Aragon, Richard ; Long, Jeffrey C. ; Virkkunen, Matti ; Goldman, David. / Haplotype-based localization of an alcohol dependence gene to the 5q34 γ-aminobutyric acid type A gene cluster. In: Archives of General Psychiatry. 2005 ; Vol. 62, No. 1. pp. 47-55.
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abstract = "Context: Pharmacobehavioral and pharmacogenetic evidence links γ-aminobutyric acid type A (GABAA) receptors and chromosomal regions containing GABAA receptor genes to ethanol-related responses. The GABAA gene cluster on chromosome 5q34 is of particular interest in the genetics of alcohol dependence because of the γ2 subunit requirement for ethanol's modulatory action on GABAA receptors, previous linkage findings in mice and humans implicating both GABRA6 and GABRG2, and reported associations of GABRA6, GABRB2, and GABRG2 alleles with alcohol dependence. Objective: To determine whether variation at the 5q34 GABA A gene cluster is implicated in differential susceptibility to alcohol dependence. Methods: Two large psychiatrically interviewed samples, a Southwestern Native American population sample (N = 433) and a Finnish sample (N = 511) with alcohol-dependent subjects and unaffected individuals, were genotyped for 6 single nucleotide polymorphisms at the 5q34 GABAA gene cluster. In addition to sib-pair linkage and case-control association analyses, linkage disequilibrium mapping with haplotypes was used. Results: Sib-pair linkage of GABRG2 to alcohol dependence was observed in Finns (P = .008). Association of the GABRB2 1412T allele with alcohol dependence was detected in both populations (Finns, P = .01; Southwestern Native Americans, P = .008), and the GABRA6 1519T allele was associated in both Finns (P = .01) and Southwestern Native Americans (P = .03). Linkage disequilibrium mapping with 3-locus haplotypes yielded evidence for an alcohol-dependence locus at the GABAA gene cluster region in both populations. The most highly significant signals were at 3-locus haplotypes that included 1 or more GABRA6 polymorphisms, with the peak signal at a GABRA6 3-locus haplotype (Finns, empirical P = .004; Southwestern Native Americans, empirical P = .02). Conclusions: We detected sib-pair linkage of 5q34 GABAA receptor genes to alcohol dependence in Finns and found association both in Finns and in Southwestern Native Americans. In both populations, the haplotype localization implicates the region containing the Pro385Ser GABRA6 polymorphism and 2 other polymorphisms at GABRA6.",
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Haplotype-based localization of an alcohol dependence gene to the 5q34 γ-aminobutyric acid type A gene cluster. / Radel, Marta; Vallejo, Roger L.; Iwata, Nakao; Aragon, Richard; Long, Jeffrey C.; Virkkunen, Matti; Goldman, David.

In: Archives of General Psychiatry, Vol. 62, No. 1, 01.01.2005, p. 47-55.

Research output: Contribution to journalArticle

TY - JOUR

T1 - Haplotype-based localization of an alcohol dependence gene to the 5q34 γ-aminobutyric acid type A gene cluster

AU - Radel, Marta

AU - Vallejo, Roger L.

AU - Iwata, Nakao

AU - Aragon, Richard

AU - Long, Jeffrey C.

AU - Virkkunen, Matti

AU - Goldman, David

PY - 2005/1/1

Y1 - 2005/1/1

N2 - Context: Pharmacobehavioral and pharmacogenetic evidence links γ-aminobutyric acid type A (GABAA) receptors and chromosomal regions containing GABAA receptor genes to ethanol-related responses. The GABAA gene cluster on chromosome 5q34 is of particular interest in the genetics of alcohol dependence because of the γ2 subunit requirement for ethanol's modulatory action on GABAA receptors, previous linkage findings in mice and humans implicating both GABRA6 and GABRG2, and reported associations of GABRA6, GABRB2, and GABRG2 alleles with alcohol dependence. Objective: To determine whether variation at the 5q34 GABA A gene cluster is implicated in differential susceptibility to alcohol dependence. Methods: Two large psychiatrically interviewed samples, a Southwestern Native American population sample (N = 433) and a Finnish sample (N = 511) with alcohol-dependent subjects and unaffected individuals, were genotyped for 6 single nucleotide polymorphisms at the 5q34 GABAA gene cluster. In addition to sib-pair linkage and case-control association analyses, linkage disequilibrium mapping with haplotypes was used. Results: Sib-pair linkage of GABRG2 to alcohol dependence was observed in Finns (P = .008). Association of the GABRB2 1412T allele with alcohol dependence was detected in both populations (Finns, P = .01; Southwestern Native Americans, P = .008), and the GABRA6 1519T allele was associated in both Finns (P = .01) and Southwestern Native Americans (P = .03). Linkage disequilibrium mapping with 3-locus haplotypes yielded evidence for an alcohol-dependence locus at the GABAA gene cluster region in both populations. The most highly significant signals were at 3-locus haplotypes that included 1 or more GABRA6 polymorphisms, with the peak signal at a GABRA6 3-locus haplotype (Finns, empirical P = .004; Southwestern Native Americans, empirical P = .02). Conclusions: We detected sib-pair linkage of 5q34 GABAA receptor genes to alcohol dependence in Finns and found association both in Finns and in Southwestern Native Americans. In both populations, the haplotype localization implicates the region containing the Pro385Ser GABRA6 polymorphism and 2 other polymorphisms at GABRA6.

AB - Context: Pharmacobehavioral and pharmacogenetic evidence links γ-aminobutyric acid type A (GABAA) receptors and chromosomal regions containing GABAA receptor genes to ethanol-related responses. The GABAA gene cluster on chromosome 5q34 is of particular interest in the genetics of alcohol dependence because of the γ2 subunit requirement for ethanol's modulatory action on GABAA receptors, previous linkage findings in mice and humans implicating both GABRA6 and GABRG2, and reported associations of GABRA6, GABRB2, and GABRG2 alleles with alcohol dependence. Objective: To determine whether variation at the 5q34 GABA A gene cluster is implicated in differential susceptibility to alcohol dependence. Methods: Two large psychiatrically interviewed samples, a Southwestern Native American population sample (N = 433) and a Finnish sample (N = 511) with alcohol-dependent subjects and unaffected individuals, were genotyped for 6 single nucleotide polymorphisms at the 5q34 GABAA gene cluster. In addition to sib-pair linkage and case-control association analyses, linkage disequilibrium mapping with haplotypes was used. Results: Sib-pair linkage of GABRG2 to alcohol dependence was observed in Finns (P = .008). Association of the GABRB2 1412T allele with alcohol dependence was detected in both populations (Finns, P = .01; Southwestern Native Americans, P = .008), and the GABRA6 1519T allele was associated in both Finns (P = .01) and Southwestern Native Americans (P = .03). Linkage disequilibrium mapping with 3-locus haplotypes yielded evidence for an alcohol-dependence locus at the GABAA gene cluster region in both populations. The most highly significant signals were at 3-locus haplotypes that included 1 or more GABRA6 polymorphisms, with the peak signal at a GABRA6 3-locus haplotype (Finns, empirical P = .004; Southwestern Native Americans, empirical P = .02). Conclusions: We detected sib-pair linkage of 5q34 GABAA receptor genes to alcohol dependence in Finns and found association both in Finns and in Southwestern Native Americans. In both populations, the haplotype localization implicates the region containing the Pro385Ser GABRA6 polymorphism and 2 other polymorphisms at GABRA6.

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