Higher frequency of premature stop codon mutations at vpu gene of human immunodeficiency virus type 1 CRF01_AE compared with those of other subtypes

Satoshi Komoto, Shoutaro Tsuji, Byong Jae Lee, Yukie Iwabu, Yoko Kojima, Toru Otake, Koki Taniguchi, Kazuyoshi Ikuta

Research output: Contribution to journalArticle

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Abstract

Our previous study demonstrated the anti-apoptosis function of the human immunodeficiency virus type 1 (HIV-1) vpu gene product in normal CD4+ T lymphocytes. In this study, using sequences obtained from the HIV sequence database, we compared vpu sequences from 184 preparations of various subtypes of HIV-1 from diverse geographical regions. Our analysis revealed that CRF01_AE isolates had premature stop codon mutations at the vpu gene at a much higher rate (36%) than other subtypes (0-9%). The premature stop codon mutations in vpu existed mostly at two amino acid residues: the methionine initiation codon and the boundary between the transmembrane (TM) and cytoplasmic domains. The mutations at the latter site were more often detected in CRF01_AE. The higher mutation rates at vpu in CRF01_AE were confirmed by sequence comparison of polymerase chain reaction products newly obtained directly from the DNA extracted from peripheral blood mononuclear cells (PBMCs), but not from the RNA from the plasma, in CRF01_AE- and subtype B-infected individuals. This finding may indicate the possibility that the more abundant population of HIV-1 CRF01_AE is able to induce apoptosis in CD4+ T lymphocytes than the populations of other subtypes.

Original languageEnglish
Pages (from-to)139-147
Number of pages9
JournalMicrobes and Infection
Volume7
Issue number2
DOIs
Publication statusPublished - 01-01-2005

Fingerprint

vpu Genes
Nonsense Codon
HIV-1
Mutation
Apoptosis
T-Lymphocytes
Initiator Codon
Mutation Rate
Methionine
Population
Blood Cells
HIV
Databases
RNA
Amino Acids
Polymerase Chain Reaction
DNA

All Science Journal Classification (ASJC) codes

  • Microbiology
  • Immunology
  • Infectious Diseases

Cite this

Komoto, Satoshi ; Tsuji, Shoutaro ; Lee, Byong Jae ; Iwabu, Yukie ; Kojima, Yoko ; Otake, Toru ; Taniguchi, Koki ; Ikuta, Kazuyoshi. / Higher frequency of premature stop codon mutations at vpu gene of human immunodeficiency virus type 1 CRF01_AE compared with those of other subtypes. In: Microbes and Infection. 2005 ; Vol. 7, No. 2. pp. 139-147.
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Higher frequency of premature stop codon mutations at vpu gene of human immunodeficiency virus type 1 CRF01_AE compared with those of other subtypes. / Komoto, Satoshi; Tsuji, Shoutaro; Lee, Byong Jae; Iwabu, Yukie; Kojima, Yoko; Otake, Toru; Taniguchi, Koki; Ikuta, Kazuyoshi.

In: Microbes and Infection, Vol. 7, No. 2, 01.01.2005, p. 139-147.

Research output: Contribution to journalArticle

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AU - Ikuta, Kazuyoshi

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