TY - JOUR
T1 - Plant GARDEN
T2 - a portal website for accessing plant genome, DNA marker, and SNP information
AU - Ichihara, H.
AU - Hirakawa, H.
AU - Ghelfi, A.
AU - Kohara, M.
AU - Yamada, M.
AU - Tamura, T.
AU - Nakaya, A.
AU - Nakamura, Y.
AU - Shirasawa, S.
AU - Sugihara, E.
AU - Tabata, S.
AU - Isobe, S.
N1 - Publisher Copyright:
© 2022 International Society for Horticultural Science. All rights reserved.
PY - 2022/4
Y1 - 2022/4
N2 - Various plant species have been sequenced with the advance of NGS technologies. The assembled reference genome sequences are used to analyze polymorphisms and haplotypes within the species by comparing re-sequenced data of multiple accessions. These data have been contributed to plant science and applied industries, such as crop breeding. Plant GARDEN (Genome and Resource Database Entry; https://plantgarden.jp/en/index) stores publicly available genome sequences, gene sequences and annotations, markers, QTLs, and SNPs. The official version was opened in July 2020. The data registered in Plant GARDEN in current (December 2020) is 119 assembled genome sequences, 5,890,957 gene sequences, 287,703 DNA markers, 8,217 QTLs, and 3,812 SNP list (vcf files). Plant GARDEN aims to provide plant genome information to plant science, breeding, and education. Therefore, we have tried to create a simple and user-friendly WUI (web-based user interface).
AB - Various plant species have been sequenced with the advance of NGS technologies. The assembled reference genome sequences are used to analyze polymorphisms and haplotypes within the species by comparing re-sequenced data of multiple accessions. These data have been contributed to plant science and applied industries, such as crop breeding. Plant GARDEN (Genome and Resource Database Entry; https://plantgarden.jp/en/index) stores publicly available genome sequences, gene sequences and annotations, markers, QTLs, and SNPs. The official version was opened in July 2020. The data registered in Plant GARDEN in current (December 2020) is 119 assembled genome sequences, 5,890,957 gene sequences, 287,703 DNA markers, 8,217 QTLs, and 3,812 SNP list (vcf files). Plant GARDEN aims to provide plant genome information to plant science, breeding, and education. Therefore, we have tried to create a simple and user-friendly WUI (web-based user interface).
UR - https://www.scopus.com/pages/publications/85130981384
UR - https://www.scopus.com/pages/publications/85130981384#tab=citedBy
U2 - 10.17660/ActaHortic.2022.1339.52
DO - 10.17660/ActaHortic.2022.1339.52
M3 - Article
AN - SCOPUS:85130981384
SN - 0567-7572
VL - 1339
SP - 415
EP - 417
JO - Acta Horticulturae
JF - Acta Horticulturae
ER -