Rapid genotyping of carcinogenic human papillomavirus by loop-mediated isothermal amplification using a new automated DNA test (Clinichip HPV™)

Toyomi Satoh, Koji Matsumoto, Takuma Fujii, Osamu Sato, Nobuhiro Gemma, Mamiko Onuki, Hiroshi Saito, Daisuke Aoki, Yasuo Hirai, Hiroyuki Yoshikawa

Research output: Contribution to journalArticle

21 Citations (Scopus)

Abstract

This study was designed to evaluate the Clinichip HPV test, a new DNA test that detects carcinogenic human papillomavirus (HPV) rapidly by loop-mediated isothermal amplification and performs genotyping of all 13 carcinogenic types using automated DNA chip technology with an assay time 2.5. h. Using this test, 247 Japanese women (109 with normal cytology, 43 with cervical intraepithelial neoplasia grade 1, 60 with cervical intraepithelial neoplasia grade 2/3 and 35 with invasive cervical cancer) were tested for carcinogenic HPV genotypes. The results were compared to those obtained by the polymerase chain reaction-amplified DNA sequencing using 13 type-specific primers. Overall, there was very good agreement for the detection of carcinogenic HPV between the Clinichip test and direct sequencing, with 95.5% total agreement and a kappa value of 0.91. Comparison of the detection of individual HPV types shows that the overall agreement was also high (range: 96.8-100%). In women with cervical intraepithelial neoplasia grade 2 or worse, the detection rate of carcinogenic HPV was 95.7% by both the Clinichip test and the direct-sequencing method, indicating complete agreement between the two methods. In conclusion, it was found that the Clinichip test is a promising new laboratory method for genotyping of carcinogenic HPV.

Original languageEnglish
Pages (from-to)83-93
Number of pages11
JournalJournal of Virological Methods
Volume188
Issue number1-2
DOIs
Publication statusPublished - 01-03-2013

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Human Papillomavirus DNA Tests
Cervical Intraepithelial Neoplasia
Oligonucleotide Array Sequence Analysis
DNA Sequence Analysis
Uterine Cervical Neoplasms
Cell Biology
Genotype
Technology
Polymerase Chain Reaction

All Science Journal Classification (ASJC) codes

  • Virology

Cite this

Satoh, Toyomi ; Matsumoto, Koji ; Fujii, Takuma ; Sato, Osamu ; Gemma, Nobuhiro ; Onuki, Mamiko ; Saito, Hiroshi ; Aoki, Daisuke ; Hirai, Yasuo ; Yoshikawa, Hiroyuki. / Rapid genotyping of carcinogenic human papillomavirus by loop-mediated isothermal amplification using a new automated DNA test (Clinichip HPV™). In: Journal of Virological Methods. 2013 ; Vol. 188, No. 1-2. pp. 83-93.
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Rapid genotyping of carcinogenic human papillomavirus by loop-mediated isothermal amplification using a new automated DNA test (Clinichip HPV™). / Satoh, Toyomi; Matsumoto, Koji; Fujii, Takuma; Sato, Osamu; Gemma, Nobuhiro; Onuki, Mamiko; Saito, Hiroshi; Aoki, Daisuke; Hirai, Yasuo; Yoshikawa, Hiroyuki.

In: Journal of Virological Methods, Vol. 188, No. 1-2, 01.03.2013, p. 83-93.

Research output: Contribution to journalArticle

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AU - Satoh, Toyomi

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AU - Gemma, Nobuhiro

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AU - Saito, Hiroshi

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AU - Hirai, Yasuo

AU - Yoshikawa, Hiroyuki

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