Roles of amino acid residues near the chromophore of photoactive yellow protein

Y. Imamoto, Hisatsugu Koshimizu, K. Mihara, O. Hisatomi, T. Mizukami, K. Tsujimoto, M. Kataoka, F. Tokunaga

Research output: Contribution to journalArticle

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Abstract

To investigate the roles of amino acid residues around the chromophore in photoactive yellow protein (PYP), new mutants, Y42A, E46A, and T50A were prepared. Their spectroscopic properties were compared with those of wild-type, Y42F, E46Q, T50V, R52Q, and E46Q/T50V, which were previously prepared and specified. The absorption maxima of Y42A, E46A, and T50A were observed at 438, 469, and 454 nm, respectively. The results of pH titration for the chromophore demonstrated that the chromophore of PYP mutant, like the wild-type, was protonated and bleached under acidic conditions. The red-shifts of the absorption maxima in mutants tended toward a pKa increase. Mutation at Glu46 induced remarkable shifts in the absorption maxima and pKa. The extinction coefficients were increased in proportion to the absorption maxima, whereas the oscillator strengths were constant. PYP mutants that conserved Tyr42 were in the pH-dependent equilibrium between two states (yellow and colorless forms). However, Y42A and Y42F were in the pH-independent equilibrium between additional intermediate state(s) at around neutral pH, in which yellow form was dominant in Y42F whereas the other was dominant in Y42A. These findings suggest that Tyr42 acts as the hinge of the protein, and the bulk as well as the hydroxyl group of Tyr42 controls the protein conformation. In all mutants, absorbance at 450 nm was decreased upon flash irradiation and afterwards recovered on a millisecond time scale. However, absorbance at 340-370 nm was increased vice versa, indicating that the long-lived near-UV intermediates are formed from mutants, as in the case of wild-type. The lifetime changes with mutation suggest the regulation of proton movement through a hydrogen-bonding network.

Original languageEnglish
Pages (from-to)4679-4685
Number of pages7
JournalBiochemistry
Volume40
Issue number15
DOIs
Publication statusPublished - 17-04-2001

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Chromophores
Mutant Proteins
Amino Acids
Proteins
Hinges
Titration
Hydroxyl Radical
Protein Conformation
Mutation
Conformations
Protons
Hydrogen bonds
Hydrogen Bonding
Irradiation
Control Groups

All Science Journal Classification (ASJC) codes

  • Biochemistry

Cite this

Imamoto, Y., Koshimizu, H., Mihara, K., Hisatomi, O., Mizukami, T., Tsujimoto, K., ... Tokunaga, F. (2001). Roles of amino acid residues near the chromophore of photoactive yellow protein. Biochemistry, 40(15), 4679-4685. https://doi.org/10.1021/bi002291u
Imamoto, Y. ; Koshimizu, Hisatsugu ; Mihara, K. ; Hisatomi, O. ; Mizukami, T. ; Tsujimoto, K. ; Kataoka, M. ; Tokunaga, F. / Roles of amino acid residues near the chromophore of photoactive yellow protein. In: Biochemistry. 2001 ; Vol. 40, No. 15. pp. 4679-4685.
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abstract = "To investigate the roles of amino acid residues around the chromophore in photoactive yellow protein (PYP), new mutants, Y42A, E46A, and T50A were prepared. Their spectroscopic properties were compared with those of wild-type, Y42F, E46Q, T50V, R52Q, and E46Q/T50V, which were previously prepared and specified. The absorption maxima of Y42A, E46A, and T50A were observed at 438, 469, and 454 nm, respectively. The results of pH titration for the chromophore demonstrated that the chromophore of PYP mutant, like the wild-type, was protonated and bleached under acidic conditions. The red-shifts of the absorption maxima in mutants tended toward a pKa increase. Mutation at Glu46 induced remarkable shifts in the absorption maxima and pKa. The extinction coefficients were increased in proportion to the absorption maxima, whereas the oscillator strengths were constant. PYP mutants that conserved Tyr42 were in the pH-dependent equilibrium between two states (yellow and colorless forms). However, Y42A and Y42F were in the pH-independent equilibrium between additional intermediate state(s) at around neutral pH, in which yellow form was dominant in Y42F whereas the other was dominant in Y42A. These findings suggest that Tyr42 acts as the hinge of the protein, and the bulk as well as the hydroxyl group of Tyr42 controls the protein conformation. In all mutants, absorbance at 450 nm was decreased upon flash irradiation and afterwards recovered on a millisecond time scale. However, absorbance at 340-370 nm was increased vice versa, indicating that the long-lived near-UV intermediates are formed from mutants, as in the case of wild-type. The lifetime changes with mutation suggest the regulation of proton movement through a hydrogen-bonding network.",
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Imamoto, Y, Koshimizu, H, Mihara, K, Hisatomi, O, Mizukami, T, Tsujimoto, K, Kataoka, M & Tokunaga, F 2001, 'Roles of amino acid residues near the chromophore of photoactive yellow protein', Biochemistry, vol. 40, no. 15, pp. 4679-4685. https://doi.org/10.1021/bi002291u

Roles of amino acid residues near the chromophore of photoactive yellow protein. / Imamoto, Y.; Koshimizu, Hisatsugu; Mihara, K.; Hisatomi, O.; Mizukami, T.; Tsujimoto, K.; Kataoka, M.; Tokunaga, F.

In: Biochemistry, Vol. 40, No. 15, 17.04.2001, p. 4679-4685.

Research output: Contribution to journalArticle

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T1 - Roles of amino acid residues near the chromophore of photoactive yellow protein

AU - Imamoto, Y.

AU - Koshimizu, Hisatsugu

AU - Mihara, K.

AU - Hisatomi, O.

AU - Mizukami, T.

AU - Tsujimoto, K.

AU - Kataoka, M.

AU - Tokunaga, F.

PY - 2001/4/17

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N2 - To investigate the roles of amino acid residues around the chromophore in photoactive yellow protein (PYP), new mutants, Y42A, E46A, and T50A were prepared. Their spectroscopic properties were compared with those of wild-type, Y42F, E46Q, T50V, R52Q, and E46Q/T50V, which were previously prepared and specified. The absorption maxima of Y42A, E46A, and T50A were observed at 438, 469, and 454 nm, respectively. The results of pH titration for the chromophore demonstrated that the chromophore of PYP mutant, like the wild-type, was protonated and bleached under acidic conditions. The red-shifts of the absorption maxima in mutants tended toward a pKa increase. Mutation at Glu46 induced remarkable shifts in the absorption maxima and pKa. The extinction coefficients were increased in proportion to the absorption maxima, whereas the oscillator strengths were constant. PYP mutants that conserved Tyr42 were in the pH-dependent equilibrium between two states (yellow and colorless forms). However, Y42A and Y42F were in the pH-independent equilibrium between additional intermediate state(s) at around neutral pH, in which yellow form was dominant in Y42F whereas the other was dominant in Y42A. These findings suggest that Tyr42 acts as the hinge of the protein, and the bulk as well as the hydroxyl group of Tyr42 controls the protein conformation. In all mutants, absorbance at 450 nm was decreased upon flash irradiation and afterwards recovered on a millisecond time scale. However, absorbance at 340-370 nm was increased vice versa, indicating that the long-lived near-UV intermediates are formed from mutants, as in the case of wild-type. The lifetime changes with mutation suggest the regulation of proton movement through a hydrogen-bonding network.

AB - To investigate the roles of amino acid residues around the chromophore in photoactive yellow protein (PYP), new mutants, Y42A, E46A, and T50A were prepared. Their spectroscopic properties were compared with those of wild-type, Y42F, E46Q, T50V, R52Q, and E46Q/T50V, which were previously prepared and specified. The absorption maxima of Y42A, E46A, and T50A were observed at 438, 469, and 454 nm, respectively. The results of pH titration for the chromophore demonstrated that the chromophore of PYP mutant, like the wild-type, was protonated and bleached under acidic conditions. The red-shifts of the absorption maxima in mutants tended toward a pKa increase. Mutation at Glu46 induced remarkable shifts in the absorption maxima and pKa. The extinction coefficients were increased in proportion to the absorption maxima, whereas the oscillator strengths were constant. PYP mutants that conserved Tyr42 were in the pH-dependent equilibrium between two states (yellow and colorless forms). However, Y42A and Y42F were in the pH-independent equilibrium between additional intermediate state(s) at around neutral pH, in which yellow form was dominant in Y42F whereas the other was dominant in Y42A. These findings suggest that Tyr42 acts as the hinge of the protein, and the bulk as well as the hydroxyl group of Tyr42 controls the protein conformation. In all mutants, absorbance at 450 nm was decreased upon flash irradiation and afterwards recovered on a millisecond time scale. However, absorbance at 340-370 nm was increased vice versa, indicating that the long-lived near-UV intermediates are formed from mutants, as in the case of wild-type. The lifetime changes with mutation suggest the regulation of proton movement through a hydrogen-bonding network.

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Imamoto Y, Koshimizu H, Mihara K, Hisatomi O, Mizukami T, Tsujimoto K et al. Roles of amino acid residues near the chromophore of photoactive yellow protein. Biochemistry. 2001 Apr 17;40(15):4679-4685. https://doi.org/10.1021/bi002291u