Structural organization of rat CD1 typifies evolutionarily conserved CD1D class genes

Shigeo Katabami, Akihiro Matsuura, Hong Zhi Chen, Kohzoh Imai, Kokichi Kikuchi

Research output: Contribution to journalArticle

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Abstract

The non-major histocompatibility complex (MHC)-encoded CD1 family ha recently emerged as a new antigen-presenting system that is distinct from either MHC class I or class II molecules. In the present study, we determined the genomic structure of the rat CD1 locus. It was extremely similar to mouse CD1 genes, especially to CD1D1. The 5' flanking region of the CD1 gene contained the binding motifs for two cytokine-inducible transcription factors, NF-IL2-A and NF-IL6. Some regulatory elements found in MHC class I genes (enhancer A, enhancer B, and the IFN response element) were absent. It is of interest that a tyrosine-based motif for endosomal localization found in the human CD1b cytoplasmic tail was encoded by a single short exon which was conserved in all CD1 molecules except for CD1a. Southern blot and direct sequencing analyses of inbred rat strains suggested very limited polymorphism in the 5' region where a hydrophobic ligand-binding groove is encoded; a single base substitution resulted in amino acid alteration of alanine (GCT) to valine (GTT) at codon 119. Comparison of the overall exon-intron organization of CD1 genes revealed that the length of the intron was also characteristic to each of the two classes of CD1 genes, classic CD1 and CD1D; such categorization has hitherto been made according to the sequence similarity of the coding region. This finding provides further support for the hypothesis that the two classes have different evolutionary histories. In contrast to the complete absence of the classic CD1 in rats and mice, the entire region of nonpolymorphic CD1D has been conserved through mammalian evolution. Similar functional properties of rodent CD1 and human CD1d are implied.

Original languageEnglish
Pages (from-to)22-31
Number of pages10
JournalImmunogenetics
Volume48
Issue number1
DOIs
Publication statusPublished - 23-06-1998

Fingerprint

Major Histocompatibility Complex
Introns
Genes
Exons
Inbred Strains Rats
CCAAT-Enhancer-Binding Protein-beta
MHC Class I Genes
5' Flanking Region
Valine
Response Elements
Southern Blotting
Codon
Alanine
Interleukin-2
Tyrosine
Tail
Rodentia
Transcription Factors
Cytokines
Ligands

All Science Journal Classification (ASJC) codes

  • Immunology
  • Genetics

Cite this

Katabami, Shigeo ; Matsuura, Akihiro ; Chen, Hong Zhi ; Imai, Kohzoh ; Kikuchi, Kokichi. / Structural organization of rat CD1 typifies evolutionarily conserved CD1D class genes. In: Immunogenetics. 1998 ; Vol. 48, No. 1. pp. 22-31.
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Structural organization of rat CD1 typifies evolutionarily conserved CD1D class genes. / Katabami, Shigeo; Matsuura, Akihiro; Chen, Hong Zhi; Imai, Kohzoh; Kikuchi, Kokichi.

In: Immunogenetics, Vol. 48, No. 1, 23.06.1998, p. 22-31.

Research output: Contribution to journalArticle

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