The evolutionary patterns of hepatitis C virus subtype 2a and 6a isolates linked to an outbreak in China in 2012

Ling Lu, Yuling An, Ji Zou, Lin Gu, Zhixin Zhao, Xiaohong Zhang, Chunhua Li, Chie Kurihara, Ryota Hokari, Jun Itakura, Masayuki Kurosaki, Namiki Izumi, Yongshui Fu, Tatsunori Nakano, Takanobu Kato, Francesco Negro, Guihua Chen

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4 Citations (Scopus)

Abstract

An HCV outbreak occurred in 2012 in China, affecting hundreds of patients. We characterized HCV subtype 2a and 6a sequences from 60 and 102 patients, respectively, and co-analyzed them with 82 local controls and 103 calibrating references. The close grouping of the patients[U+05F3] sequences contrasted sharply with the diversity of local controls. Scaled by the calibrating references, the emergence of patients[U+05F3] isolates was estimated at 2-5 years before sampling. In contrast, the controls intermingled with the calibrating references that were much older. For both subtypes, the major and minor clusters could be defined, with the closeness to indicate linked transmission. Conclusion: HCV sequences from the study patients grouped into three subtype 2a and two subtype 6a clusters, in addition to three 6a solitary branches, representing descendants of eight earlier strains that were distinct and otherwise sporadic. Due to iatrogenic transmission through reusing needles, five strains were highly selected and preferentially spread.

Original languageEnglish
Pages (from-to)431-438
Number of pages8
JournalVirology
Volume485
DOIs
Publication statusPublished - 01-11-2015

All Science Journal Classification (ASJC) codes

  • Virology

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    Lu, L., An, Y., Zou, J., Gu, L., Zhao, Z., Zhang, X., Li, C., Kurihara, C., Hokari, R., Itakura, J., Kurosaki, M., Izumi, N., Fu, Y., Nakano, T., Kato, T., Negro, F., & Chen, G. (2015). The evolutionary patterns of hepatitis C virus subtype 2a and 6a isolates linked to an outbreak in China in 2012. Virology, 485, 431-438. https://doi.org/10.1016/j.virol.2015.08.012