Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations

Daiki Miki; Michiaki Kubo; Atsushi Takahashi; Kyong Ah Yoon; Jeongseon Kim; Geon Kook Lee; Jae Ill Zo; Jin Soo Lee; Naoya Hosono; Takashi Morizono; Tatsuhiko Tsunoda; Naoyuki Kamatani; Kazuaki Chayama; Takashi Takahashi; Johji Inazawa; Yusuke Nakamura; Yataro Daigo

doi:10.1038/ng.667

Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations

Daiki Miki, Michiaki Kubo, Atsushi Takahashi, Kyong Ah Yoon, Jeongseon Kim, Geon Kook Lee, Jae Ill Zo, Jin Soo Lee, Naoya Hosono, Takashi Morizono, Tatsuhiko Tsunoda, Naoyuki Kamatani, Kazuaki Chayama, Takashi Takahashi, Johji Inazawa, Yusuke Nakamura, Yataro Daigo

Research output: Contribution to journal › Article › peer-review

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Abstract

Lung cancer is the most common cause of death from cancer worldwide, and its incidence is increasing in East Asian and Western countries. To identify genetic factors that modify the risk of lung adenocarcinoma, we conducted a genome-wide association study in a Japanese cohort, with replication in two independent studies in Japanese and Korean individuals, in a total of 2,098 lung adenocarcinoma cases and 11,048 controls. The combined analyses identified two susceptibility loci for lung adenocarcinoma: TERT (rs2736100, combined P = 2.91 × 10 -11, odds ratio (OR) = 1.27) and TP63 (rs10937405, combined P = 7.26 × 10 -12, OR = 1.31). Fine mapping of the region containing TP63 showed that a SNP (rs4488809) in intron 1 of TP63 showed the most significant association. Our results suggest that genetic variation in TP63 may influence susceptibility to lung adenocarcinoma in East Asian populations.

Original language	English
Pages (from-to)	893-896
Number of pages	4
Journal	Nature Genetics
Volume	42
Issue number	10
DOIs	https://doi.org/10.1038/ng.667
Publication status	Published - 10-2010
Externally published	Yes

All Science Journal Classification (ASJC) codes

Genetics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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Miki, D., Kubo, M., Takahashi, A., Yoon, K. A., Kim, J., Lee, G. K., Zo, J. I., Lee, J. S., Hosono, N., Morizono, T., Tsunoda, T., Kamatani, N., Chayama, K., Takahashi, T., Inazawa, J., Nakamura, Y., & Daigo, Y. (2010). Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations. Nature Genetics, 42(10), 893-896. https://doi.org/10.1038/ng.667

@article{ec07f5f308414c09ab13b0e8ff9f5f86,

title = "Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations",

abstract = "Lung cancer is the most common cause of death from cancer worldwide, and its incidence is increasing in East Asian and Western countries. To identify genetic factors that modify the risk of lung adenocarcinoma, we conducted a genome-wide association study in a Japanese cohort, with replication in two independent studies in Japanese and Korean individuals, in a total of 2,098 lung adenocarcinoma cases and 11,048 controls. The combined analyses identified two susceptibility loci for lung adenocarcinoma: TERT (rs2736100, combined P = 2.91 × 10 -11, odds ratio (OR) = 1.27) and TP63 (rs10937405, combined P = 7.26 × 10 -12, OR = 1.31). Fine mapping of the region containing TP63 showed that a SNP (rs4488809) in intron 1 of TP63 showed the most significant association. Our results suggest that genetic variation in TP63 may influence susceptibility to lung adenocarcinoma in East Asian populations.",

author = "Daiki Miki and Michiaki Kubo and Atsushi Takahashi and Yoon, {Kyong Ah} and Jeongseon Kim and Lee, {Geon Kook} and Zo, {Jae Ill} and Lee, {Jin Soo} and Naoya Hosono and Takashi Morizono and Tatsuhiko Tsunoda and Naoyuki Kamatani and Kazuaki Chayama and Takashi Takahashi and Johji Inazawa and Yusuke Nakamura and Yataro Daigo",

note = "Funding Information: We thank the staff of the Laboratory for Genotyping Development, Center for Genomic Medicine, RIKEN and the Human Genome Center, Institute of Medical Science, The University of Tokyo for their contribution to SNP genotyping. We also thank members of the BioBank Japan project, the Rotary Club of Osaka-Midosuji District 2660 Rotary International in Japan, and Research Institute and Hospital, National Cancer Center, Korea for supporting our study. Y.D. is a member of the Shiga Cancer Treatment Project supported by Shiga Prefecture (Japan). This work was conducted as a part of the BioBank Japan Project and supported by the Ministry of Education, Culture, Sports, Sciences and Technology of the Japanese government. Management of second replication samples in Korea was supported by grants 0710221 and 0940620 from the National Cancer Center, Korea.",

year = "2010",

month = oct,

doi = "10.1038/ng.667",

language = "English",

volume = "42",

pages = "893--896",

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Miki, D, Kubo, M, Takahashi, A, Yoon, KA, Kim, J, Lee, GK, Zo, JI, Lee, JS, Hosono, N, Morizono, T, Tsunoda, T, Kamatani, N, Chayama, K, Takahashi, T, Inazawa, J, Nakamura, Y & Daigo, Y 2010, 'Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations', Nature Genetics, vol. 42, no. 10, pp. 893-896. https://doi.org/10.1038/ng.667

TY - JOUR

T1 - Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations

AU - Miki, Daiki

AU - Kubo, Michiaki

AU - Takahashi, Atsushi

AU - Yoon, Kyong Ah

AU - Kim, Jeongseon

AU - Lee, Geon Kook

AU - Zo, Jae Ill

AU - Lee, Jin Soo

AU - Hosono, Naoya

AU - Morizono, Takashi

AU - Tsunoda, Tatsuhiko

AU - Kamatani, Naoyuki

AU - Chayama, Kazuaki

AU - Takahashi, Takashi

AU - Inazawa, Johji

AU - Nakamura, Yusuke

AU - Daigo, Yataro

N1 - Funding Information: We thank the staff of the Laboratory for Genotyping Development, Center for Genomic Medicine, RIKEN and the Human Genome Center, Institute of Medical Science, The University of Tokyo for their contribution to SNP genotyping. We also thank members of the BioBank Japan project, the Rotary Club of Osaka-Midosuji District 2660 Rotary International in Japan, and Research Institute and Hospital, National Cancer Center, Korea for supporting our study. Y.D. is a member of the Shiga Cancer Treatment Project supported by Shiga Prefecture (Japan). This work was conducted as a part of the BioBank Japan Project and supported by the Ministry of Education, Culture, Sports, Sciences and Technology of the Japanese government. Management of second replication samples in Korea was supported by grants 0710221 and 0940620 from the National Cancer Center, Korea.

PY - 2010/10

Y1 - 2010/10

N2 - Lung cancer is the most common cause of death from cancer worldwide, and its incidence is increasing in East Asian and Western countries. To identify genetic factors that modify the risk of lung adenocarcinoma, we conducted a genome-wide association study in a Japanese cohort, with replication in two independent studies in Japanese and Korean individuals, in a total of 2,098 lung adenocarcinoma cases and 11,048 controls. The combined analyses identified two susceptibility loci for lung adenocarcinoma: TERT (rs2736100, combined P = 2.91 × 10 -11, odds ratio (OR) = 1.27) and TP63 (rs10937405, combined P = 7.26 × 10 -12, OR = 1.31). Fine mapping of the region containing TP63 showed that a SNP (rs4488809) in intron 1 of TP63 showed the most significant association. Our results suggest that genetic variation in TP63 may influence susceptibility to lung adenocarcinoma in East Asian populations.

AB - Lung cancer is the most common cause of death from cancer worldwide, and its incidence is increasing in East Asian and Western countries. To identify genetic factors that modify the risk of lung adenocarcinoma, we conducted a genome-wide association study in a Japanese cohort, with replication in two independent studies in Japanese and Korean individuals, in a total of 2,098 lung adenocarcinoma cases and 11,048 controls. The combined analyses identified two susceptibility loci for lung adenocarcinoma: TERT (rs2736100, combined P = 2.91 × 10 -11, odds ratio (OR) = 1.27) and TP63 (rs10937405, combined P = 7.26 × 10 -12, OR = 1.31). Fine mapping of the region containing TP63 showed that a SNP (rs4488809) in intron 1 of TP63 showed the most significant association. Our results suggest that genetic variation in TP63 may influence susceptibility to lung adenocarcinoma in East Asian populations.

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ER -

Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations

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