Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

Tung Phan; Riona Hatazawa; Satoshi Komoto; Shuichi Nishimura; Pattara Khamrin; Ngan Thi Kim Pham; Shoko Okitsu; Takashi Kobayashi; Niwat Maneekarn; Satoshi Hayakawa; Hiroshi Ushijima

doi:10.1007/s00705-022-05462-2

Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

Tung Phan, Riona Hatazawa, Satoshi Komoto, Shuichi Nishimura, Pattara Khamrin, Ngan Thi Kim Pham, Shoko Okitsu, Takashi Kobayashi, Niwat Maneekarn, Satoshi Hayakawa, Hiroshi Ushijima

Virology

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

Abstract

Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.

Original language	English
Pages (from-to)	1603-1606
Number of pages	4
Journal	Archives of Virology
Volume	167
Issue number	7
DOIs	https://doi.org/10.1007/s00705-022-05462-2
Publication status	Published - 07-2022

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Virology

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10.1007/s00705-022-05462-2

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title = "Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan",

abstract = "Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.",

author = "Tung Phan and Riona Hatazawa and Satoshi Komoto and Shuichi Nishimura and Pattara Khamrin and Pham, {Ngan Thi Kim} and Shoko Okitsu and Takashi Kobayashi and Niwat Maneekarn and Satoshi Hayakawa and Hiroshi Ushijima",

note = "Publisher Copyright: {\textcopyright} 2022, The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.",

year = "2022",

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doi = "10.1007/s00705-022-05462-2",

language = "English",

volume = "167",

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AU - Phan, Tung

AU - Hatazawa, Riona

AU - Komoto, Satoshi

AU - Nishimura, Shuichi

AU - Khamrin, Pattara

AU - Pham, Ngan Thi Kim

AU - Okitsu, Shoko

AU - Kobayashi, Takashi

AU - Maneekarn, Niwat

AU - Hayakawa, Satoshi

AU - Ushijima, Hiroshi

PY - 2022/7

Y1 - 2022/7

N2 - Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.

AB - Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.

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Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

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