Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

Tung Phan; Riona Hatazawa; Satoshi Komoto; Shuichi Nishimura; Pattara Khamrin; Ngan Thi Kim Pham; Shoko Okitsu; Takashi Kobayashi; Niwat Maneekarn; Satoshi Hayakawa; Hiroshi Ushijima

doi:10.1007/s00705-022-05462-2

Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

Tung Phan
, Riona Hatazawa
, Satoshi Komoto
, Shuichi Nishimura
, Pattara Khamrin
, Ngan Thi Kim Pham
, Shoko Okitsu
, Takashi Kobayashi
, Niwat Maneekarn
, Satoshi Hayakawa
, Hiroshi Ushijima

Virology

Research output: Contribution to journal › Article › peer-review

5 Citations (Scopus)

Abstract

Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.

Original language	English
Pages (from-to)	1603-1606
Number of pages	4
Journal	Archives of Virology
Volume	167
Issue number	7
DOIs	https://doi.org/10.1007/s00705-022-05462-2
Publication status	Published - 07-2022

All Science Journal Classification (ASJC) codes

Virology

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10.1007/s00705-022-05462-2

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title = "Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan",

abstract = "Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.",

author = "Tung Phan and Riona Hatazawa and Satoshi Komoto and Shuichi Nishimura and Pattara Khamrin and Pham, \{Ngan Thi Kim\} and Shoko Okitsu and Takashi Kobayashi and Niwat Maneekarn and Satoshi Hayakawa and Hiroshi Ushijima",

note = "Publisher Copyright: {\textcopyright} 2022, The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.",

year = "2022",

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doi = "10.1007/s00705-022-05462-2",

language = "English",

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T1 - Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

AU - Phan, Tung

AU - Hatazawa, Riona

AU - Komoto, Satoshi

AU - Nishimura, Shuichi

AU - Khamrin, Pattara

AU - Pham, Ngan Thi Kim

AU - Okitsu, Shoko

AU - Kobayashi, Takashi

AU - Maneekarn, Niwat

AU - Hayakawa, Satoshi

AU - Ushijima, Hiroshi

PY - 2022/7

Y1 - 2022/7

N2 - Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.

AB - Species A rotaviruses (RVAs) have been recognized as one of the leading causes of acute gastroenteritis in humans worldwide. Here, the complete coding sequences of 11 RNA segments of an uncommon G9P[4] RVA strain, which was detected in feces of a diarrheal child in Japan, were determined by next-generation sequencing technology. Its genomic constellation, VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5, was determined as G9-P[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2. This work reports the complete coding sequences of a G9P[4] RVA strain containing DS-1-like (genotype 2) genes that was isolated in Japan in 2013.

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JO - Archives of Virology

JF - Archives of Virology

IS - 7

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Whole genome sequence of an uncommon G9P[4] species A rotavirus containing DS-1-like (genotype 2) genes in Japan

Abstract

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