Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan

Tung Phan; Masaaki Kobayashi; Koo Nagasawa; Riona Hatazawa; Ngan Thi Kim Pham; Hideaki Miyashita; Satoshi Komoto; Takeshi Tajima; Tuneyoshi Baba; Shoko Okitsu; Pattara Khamrin; Niwat Maneekarn; Hirokazu Kimura; Takeshi Kobayashi; Satoshi Hayakawa; Hiroshi Ushijima

doi:10.1007/s13337-022-00765-z

Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan

Tung Phan
, Masaaki Kobayashi
, Koo Nagasawa
, Riona Hatazawa
, Ngan Thi Kim Pham
, Hideaki Miyashita
, Satoshi Komoto
, Takeshi Tajima
, Tuneyoshi Baba
, Shoko Okitsu
, Pattara Khamrin
, Niwat Maneekarn
, Hirokazu Kimura
, Takeshi Kobayashi
, Satoshi Hayakawa
, Hiroshi Ushijima

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

Abstract

Unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P [8] rotaviruses) have emerged and rapidly spread in several countries. In this study, the nucleotide sequences of seven human rotavirus G8P [8] strains in 2017 and 2019 in Japan were determined using viral metagenomics. Its genomic constellation (VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5 genes) was defined as G8-P [8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Our genetic analysis revealed that the Japanese G8P [8] rotavirus strains in 2017 and 2019 were classified into the same lineages G8-5 and P [8]-3, but they were phylogenetically located on separate branches and belonged to distinct clusters. Our study is the first attempt to investigate the evolution of emerging rotavirus G8P [8] in Japan.

Original language	English
Pages (from-to)	215-218
Number of pages	4
Journal	VirusDisease
Volume	33
Issue number	2
DOIs	https://doi.org/10.1007/s13337-022-00765-z
Publication status	Published - 06-2022
Externally published	Yes

All Science Journal Classification (ASJC) codes

Virology
Infectious Diseases

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1007/s13337-022-00765-z

Cite this

Phan, T., Kobayashi, M., Nagasawa, K., Hatazawa, R., Thi Kim Pham, N., Miyashita, H., Komoto, S., Tajima, T., Baba, T., Okitsu, S., Khamrin, P., Maneekarn, N., Kimura, H., Kobayashi, T., Hayakawa, S., & Ushijima, H. (2022). Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan. VirusDisease, 33(2), 215-218. https://doi.org/10.1007/s13337-022-00765-z

@article{722e2e0b427e42d49a005b473180f43d,

title = "Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan",

abstract = "Unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P [8] rotaviruses) have emerged and rapidly spread in several countries. In this study, the nucleotide sequences of seven human rotavirus G8P [8] strains in 2017 and 2019 in Japan were determined using viral metagenomics. Its genomic constellation (VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5 genes) was defined as G8-P [8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Our genetic analysis revealed that the Japanese G8P [8] rotavirus strains in 2017 and 2019 were classified into the same lineages G8-5 and P [8]-3, but they were phylogenetically located on separate branches and belonged to distinct clusters. Our study is the first attempt to investigate the evolution of emerging rotavirus G8P [8] in Japan.",

keywords = "Emergence, G8P [8], Genomic analysis, Rotavirus, Whole genome sequencing",

author = "Tung Phan and Masaaki Kobayashi and Koo Nagasawa and Riona Hatazawa and \{Thi Kim Pham\}, Ngan and Hideaki Miyashita and Satoshi Komoto and Takeshi Tajima and Tuneyoshi Baba and Shoko Okitsu and Pattara Khamrin and Niwat Maneekarn and Hirokazu Kimura and Takeshi Kobayashi and Satoshi Hayakawa and Hiroshi Ushijima",

note = "Publisher Copyright: {\textcopyright} 2022, The Author(s), under exclusive licence to Indian Virological Society.",

year = "2022",

month = jun,

doi = "10.1007/s13337-022-00765-z",

language = "English",

volume = "33",

pages = "215--218",

journal = "VirusDisease",

issn = "2347-3584",

publisher = "Springer",

number = "2",

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Phan, T, Kobayashi, M, Nagasawa, K, Hatazawa, R, Thi Kim Pham, N, Miyashita, H, Komoto, S, Tajima, T, Baba, T, Okitsu, S, Khamrin, P, Maneekarn, N, Kimura, H, Kobayashi, T, Hayakawa, S & Ushijima, H 2022, 'Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan', VirusDisease, vol. 33, no. 2, pp. 215-218. https://doi.org/10.1007/s13337-022-00765-z

TY - JOUR

T1 - Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan

AU - Phan, Tung

AU - Kobayashi, Masaaki

AU - Nagasawa, Koo

AU - Hatazawa, Riona

AU - Thi Kim Pham, Ngan

AU - Miyashita, Hideaki

AU - Komoto, Satoshi

AU - Tajima, Takeshi

AU - Baba, Tuneyoshi

AU - Okitsu, Shoko

AU - Khamrin, Pattara

AU - Maneekarn, Niwat

AU - Kimura, Hirokazu

AU - Kobayashi, Takeshi

AU - Hayakawa, Satoshi

AU - Ushijima, Hiroshi

PY - 2022/6

Y1 - 2022/6

N2 - Unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P [8] rotaviruses) have emerged and rapidly spread in several countries. In this study, the nucleotide sequences of seven human rotavirus G8P [8] strains in 2017 and 2019 in Japan were determined using viral metagenomics. Its genomic constellation (VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5 genes) was defined as G8-P [8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Our genetic analysis revealed that the Japanese G8P [8] rotavirus strains in 2017 and 2019 were classified into the same lineages G8-5 and P [8]-3, but they were phylogenetically located on separate branches and belonged to distinct clusters. Our study is the first attempt to investigate the evolution of emerging rotavirus G8P [8] in Japan.

AB - Unusual DS-1-like intergenogroup reassortant rotaviruses with a bovine-like G8 genotype (DS-1-like G8P [8] rotaviruses) have emerged and rapidly spread in several countries. In this study, the nucleotide sequences of seven human rotavirus G8P [8] strains in 2017 and 2019 in Japan were determined using viral metagenomics. Its genomic constellation (VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5 genes) was defined as G8-P [8]-I2-R2-C2-M2-A2-N2-T2-E2-H2. Our genetic analysis revealed that the Japanese G8P [8] rotavirus strains in 2017 and 2019 were classified into the same lineages G8-5 and P [8]-3, but they were phylogenetically located on separate branches and belonged to distinct clusters. Our study is the first attempt to investigate the evolution of emerging rotavirus G8P [8] in Japan.

KW - Emergence

KW - G8P [8]

KW - Genomic analysis

KW - Rotavirus

KW - Whole genome sequencing

UR - https://www.scopus.com/pages/publications/85128760783

UR - https://www.scopus.com/pages/publications/85128760783#tab=citedBy

U2 - 10.1007/s13337-022-00765-z

DO - 10.1007/s13337-022-00765-z

M3 - Article

AN - SCOPUS:85128760783

SN - 2347-3584

VL - 33

SP - 215

EP - 218

JO - VirusDisease

JF - VirusDisease

IS - 2

ER -

Whole genome sequencing and evolutionary analysis of G8P [8] rotaviruses emerging in Japan

Abstract

All Science Journal Classification (ASJC) codes

UN SDGs

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