Viral gene sequences reveal the variable history of hepatitis C virus infection among countries

Tatsunori Nakano, Ling Lu, Pengbo Liu, Oliver G. Pybus

研究成果: Article査読

74 被引用数 (Scopus)

抄録

Background. The analysis of molecular phylogenies estimated from the gene sequences of sampled viruses can provide important insights into epidemiological processes. Methods. The demographic and migration histories of the prevalent hepatitis C virus (HCV) subtypes 1a and 1b were inferred from viral gene sequences sampled in 5 countries. Estimated viral phylogenies were analyzed by use of methods based on parsimony and coalescent theory. Results. The parsimony migration analysis suggested that the global subtype 1a and 1b epidemics are geographically structured, with asymmetrical movement of HCV strains among the sampled countries. The coalescent analysis indicated that subtype 1a infections in the United States, Brazil, and Indonesia began to increase exponentially during the 1940s and 1950s, whereas in Vietnam the increase began after the 1970s. In contrast, subtype 1b infections in these 4 countries and in Japan began to increase exponentially between 1880 and 1920, with a possible recent decrease in infection rates in Indonesia and Japan. In the United States, Brazil, and Vietnam, the epidemic growth rates for subtype 1a strains were higher than those for subtype 1b strains, whereas the growth rates were similar in Indonesia. Conclusions. The estimated histories of migration and population growth indicated that patterns of HCV transmission differ among countries and viral subtypes.

本文言語English
ページ(範囲)1098-1108
ページ数11
ジャーナルJournal of Infectious Diseases
190
6
DOI
出版ステータスPublished - 15-09-2004
外部発表はい

All Science Journal Classification (ASJC) codes

  • 免疫アレルギー学
  • 感染症

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